RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 LRCOL1A6NCL2 159 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 GCGP01275 180 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 FGF8P55075 233 aaPredicted RBP7.62□□□□□ -1.19
VPS28-214ENST00000531032 SMUG1Q53HV7 270 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 TMEM75Q8N9X5 138 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 NHLRC2Q8NBF2 726 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 SUN5Q8TC36 379 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 MAP1LC3BQ9GZQ8 125 aa7.62□□□□□ -1.19
VPS28-214ENST00000531032 KANTRA0A1W2PQU2 76 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 IBA57-AS1B1ANH7 110 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 PEX7O00628 323 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 ZNF345Q14585 488 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 ZNF726P1Q15940 193 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 SAPCD1Q5SSQ6 148 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 SLC25A29Q8N8R3 303 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 NTN5Q8WTR8 489 aaPredicted RBP7.61□□□□□ -1.19
VPS28-214ENST00000531032 ZNF471Q9BX82 626 aaPredicted RBP7.61□□□□□ -1.19
VPS28-214ENST00000531032 BOLA1Q9Y3E2 137 aa7.61□□□□□ -1.19
VPS28-214ENST00000531032 IGLV5-52A0A0A0MRZ9 124 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 TRBV6-4A0A1B0GX49 114 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 PSCAO43653 123 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 CIDEAO60543 219 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 PFN1P07737 140 aaKnown RBP7.6□□□□□ -1.19
VPS28-214ENST00000531032 ZNF876PQ49A33 203 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 CFAP126Q5VTH2 177 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 KCNRGQ8N5I3 272 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 TMEM70Q9BUB7 260 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 NKX6-2Q9C056 277 aaPredicted RBP7.6□□□□□ -1.19
VPS28-214ENST00000531032 SRRM2Q9UQ35 2752 aaKnown RBP7.6□□□□□ -1.19
VPS28-214ENST00000531032 MYCBP2O75592 4640 aa7.6□□□□□ -1.19
VPS28-214ENST00000531032 TRAV8-6A0A0B4J262 113 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 TRAV34A0A0B4J273 112 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 A0A0D9SG52 128 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 RS1O15537 224 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 PFDN1O60925 122 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 SMR3BP02814 79 aaPredicted RBP7.59□□□□□ -1.19
VPS28-214ENST00000531032 S100A4P26447 101 aaKnown RBP7.59□□□□□ -1.19
VPS28-214ENST00000531032 UBE2G1P62253 170 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 EIF5AP63241 154 aaKnown RBP7.59□□□□□ -1.19
VPS28-214ENST00000531032 RHOHQ15669 191 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 CST9LP1Q5W188 147 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 DPPA3Q6W0C5 159 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 Q86TA4 180 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 TCTE3Q8IZS6 198 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 Q8N814 137 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 FAM213BQ8TBF2 198 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 HIST1H2BAQ96A08 127 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 C9orf85Q96MD7 179 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 PRADC1Q9BSG0 188 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 CYTL1Q9NRR1 136 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 C11orf21Q9P2W6 132 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 ARL2-SNX15V9GYD0 113 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 VPS13BQ7Z7G8 4022 aa7.59□□□□□ -1.19
VPS28-214ENST00000531032 FAM74A7A6NL05 159 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 BCL2L11O43521 198 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 AKR1C3P42330 323 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 ZNF80P51504 273 aaPredicted RBP7.58□□□□□ -1.2
VPS28-214ENST00000531032 HAMPP81172 84 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 LAGE3Q14657 143 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 OR10J3Q5JRS4 329 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 LELP1Q5T871 98 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 PTH2Q96A98 100 aa7.58□□□□□ -1.2
VPS28-214ENST00000531032 FLG2Q5D862 2391 aaPredicted RBP7.57□□□□□ -1.2
VPS28-214ENST00000531032 A0A1B0GV50 99 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 HMSDA8MTL9 139 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 UMAD1C9J7I0 102 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 FAM229AH3BQW9 127 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 IGLV2-11P01706 119 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 SEC11BP0C7V7 166 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 MGST1P10620 155 aaKnown RBP7.57□□□□□ -1.2
VPS28-214ENST00000531032 ZNF506Q5JVG8 444 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 AKAP14Q86UN6 197 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 LINC00479Q96M42 142 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 TCEAL7Q9BRU2 100 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 GTSF1LQ9H1H1 148 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 Q9HAA7 133 aa7.57□□□□□ -1.2
VPS28-214ENST00000531032 IGHV3-73A0A0B4J1V6 119 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 PGPEP1LA6NFU8 196 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 IGHV3-30P01768 117 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 IGHV3-33P01772 117 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 IGHV3-30-3P0DP02 117 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 IGHV3-30-5P0DP03 117 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 RNASE3P12724 160 aaKnown RBP7.56□□□□□ -1.2
VPS28-214ENST00000531032 TPT1P13693 172 aaKnown RBP7.56□□□□□ -1.2
VPS28-214ENST00000531032 ASIPP42127 132 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 FHITP49789 147 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 Q6ZSN1 163 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 ATP6V0E2Q8NHE4 81 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 SFT2D1Q8WV19 159 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 FMC1Q96HJ9 113 aa7.56□□□□□ -1.2
VPS28-214ENST00000531032 FABP5P3A8MUU1 101 aa7.55□□□□□ -1.2
VPS28-214ENST00000531032 B4DEV8 164 aa7.55□□□□□ -1.2
VPS28-214ENST00000531032 C1QBP02746 253 aa7.55□□□□□ -1.2
VPS28-214ENST00000531032 LINC00694P0DN24 101 aa7.55□□□□□ -1.2
VPS28-214ENST00000531032 LGALSLQ3ZCW2 172 aaPredicted RBP7.55□□□□□ -1.2
VPS28-214ENST00000531032 FAM30AQ9NZY2 134 aa7.55□□□□□ -1.2
VPS28-214ENST00000531032 ZFP30Q9Y2G7 519 aa7.55□□□□□ -1.2
VPS28-214ENST00000531032 M0R036 132 aa7.54□□□□□ -1.2
VPS28-214ENST00000531032 PAGE4O60829 102 aa7.54□□□□□ -1.2
VPS28-214ENST00000531032 PIK3CD-AS1Q5SR53 167 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms