RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 GGTLC3B5MD39 225 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 H3BQ15 152 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 CRYBA1P05813 215 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 CRYGDP07320 174 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 SMIM17P0DL12 118 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 NPPCP23582 126 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 GNG5P63218 68 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 FABP9Q0Z7S8 132 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 KLF5Q13887 457 aaPredicted RBP3.14□□□□□ -1.91
CD44-226ENST00000527889 TWIST1Q15672 202 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 DEFB136Q30KP8 78 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 FAM162BQ5T6X4 162 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 ZNF343Q6P1L6 599 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 UNQ9165/PRO28630Q6UXU0 137 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 FAM231DQ6ZW35 169 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 Q8N2B8 174 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 GATD1Q8NB37 220 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 OR2K2Q8NGT1 345 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 ZNF418Q8TF45 676 aaPredicted RBP3.14□□□□□ -1.91
CD44-226ENST00000527889 USMG5Q96IX5 58 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 SMIM7Q9BQ49 75 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 NIPSNAP3BQ9BS92 247 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 TMEM70Q9BUB7 260 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 SNHG12Q9BXW3 62 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 NKX6-2Q9C056 277 aaPredicted RBP3.14□□□□□ -1.91
CD44-226ENST00000527889 PARLQ9H300 379 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 SMDT1Q9H4I9 107 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 ZNF586Q9NXT0 402 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 SIGLEC8Q9NYZ4 499 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 ERG28Q9UKR5 140 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 KIAA1109Q2LD37 5005 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 IGHV4OR15-8A0A075B7B6 117 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 A0A087WW49 117 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 IGLV9-49A0A0B4J1Y8 123 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 PGPA6NDG6 321 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 OR4C46A6NHA9 309 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 TMEM250H0YL14 139 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 NDUFA4O00483 81 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 MRPS12O15235 138 aaKnown RBP3.13□□□□□ -1.91
CD44-226ENST00000527889 SLC25A5P05141 298 aaKnown RBP3.13□□□□□ -1.91
CD44-226ENST00000527889 LGALS1P09382 135 aaKnown RBP3.13□□□□□ -1.91
CD44-226ENST00000527889 FRMD6-AS1P0C7T7 363 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 IGLC2P0DOY2 106 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 AZU1P20160 251 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 CRYBB3P26998 211 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 GNG4P50150 75 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 HILS1P60008 231 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 ADIRFQ15847 76 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 C4orf26Q17RF5 130 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 FAM19A1Q7Z5A9 133 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 MRPL55Q7Z7F7 128 aaKnown RBP3.13□□□□□ -1.91
CD44-226ENST00000527889 BPIFA4PQ86YQ2 179 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 CBLN2Q8IUK8 224 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 OR8I2Q8N0Y5 310 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 EXOC3-AS1Q8N2X6 119 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 SVBPQ8N300 66 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 OR4F17Q8NGA8 305 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 ZNRF2Q8NHG8 242 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 MYOZ3Q8TDC0 251 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 TMEM190Q8WZ59 177 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 RPL36ALQ969Q0 106 aaKnown RBP3.13□□□□□ -1.91
CD44-226ENST00000527889 HIST1H2BAQ96A08 127 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 C11orf52Q96A22 123 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 BORCS7Q96B45 105 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 TVP23CQ96ET8 276 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 METTL26Q96S19 204 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 Q9H3A6 140 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 TMEM14CQ9P0S9 112 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 SMAD5-AS1Q9Y6J3 95 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 ARL2-SNX15V9GYD0 113 aa3.13□□□□□ -1.91
CD44-226ENST00000527889 TRBV20OR9-2A0A075B6H5 130 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 TRBV19A0A075B6N1 114 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 A0A1B0GX51 115 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 C7orf77A4D0Y5 90 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 LYRM9A8MSI8 78 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 SNURFLB1AK76 121 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 M0R3E3 92 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 PEX7O00628 323 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 PHOX2AO14813 284 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 BUB3O43684 328 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 CDK2AP2O75956 126 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 CD28P10747 220 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 ESDP10768 282 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 RPL35AP18077 110 aaKnown RBP3.12□□□□□ -1.91
CD44-226ENST00000527889 RPL7P18124 248 aaKnown RBP3.12□□□□□ -1.91
CD44-226ENST00000527889 HLA-DMBP28068 263 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 MYCNOSP40205 109 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 RPL23P62829 140 aaKnown RBP3.12□□□□□ -1.91
CD44-226ENST00000527889 TMEM241Q24JQ0 296 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 CENPWQ5EE01 88 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 RNF182Q8N6D2 247 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 KLHL30-AS1Q8NEE0 82 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 OR5A1Q8NGJ0 315 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 LINC01006Q8NI28 216 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 NTN5Q8WTR8 489 aaPredicted RBP3.12□□□□□ -1.91
CD44-226ENST00000527889 LINC00479Q96M42 142 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 TXNDC17Q9BRA2 123 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 ANAPC13Q9BS18 74 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 SDF2L1Q9HCN8 221 aa3.12□□□□□ -1.91
CD44-226ENST00000527889 RPS10P5Q9NQ39 176 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms