RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 BLCAPP62952 87 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 SUMO4Q6EEV6 95 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 C5orf56Q8N8D9 126 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 KIR2DL5BA0A0G2JN68 375 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 KIR2DL5BA0A0G2JPC4 375 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 KIR2DL5AQ8N109 375 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 CRYGCP07315 174 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 SLURP1P55000 103 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 PCNX1Q96RV3 2341 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 NOTCH3Q9UM47 2321 aa12.84□□□□□ -0.35
PCDHA1-203ENST00000504120 HAMPP81172 84 aa12.83□□□□□ -0.35
PCDHA1-203ENST00000504120 CLPSL2Q6UWE3 100 aa12.83□□□□□ -0.35
PCDHA1-203ENST00000504120 SEM1Q6ZVN7 128 aa12.83□□□□□ -0.35
PCDHA1-203ENST00000504120 PRO3102Q9H379 93 aa12.83□□□□□ -0.35
PCDHA1-203ENST00000504120 Q9H8V8 135 aa12.83□□□□□ -0.35
PCDHA1-203ENST00000504120 IGLV1-47P01700 117 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 XCL1P47992 114 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 ADORA2A-AS1P86434 159 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 TRAV25A0A0B4J276 109 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 PCP2Q8IVA1 136 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 PRSS47A8MTI9 375 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 TEX22C9J3V5 150 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 APRG1Q8IVJ8 170 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 C16orf74Q96GX8 76 aa12.83□□□□□ -0.36
PCDHA1-203ENST00000504120 RPL39LQ96EH5 51 aaKnown RBP12.82□□□□□ -0.36
PCDHA1-203ENST00000504120 DAZAP2Q15038 168 aaPredicted RBP12.82□□□□□ -0.36
PCDHA1-203ENST00000504120 LINC01545Q5VT33 79 aa12.82□□□□□ -0.36
PCDHA1-203ENST00000504120 A0A0J9YY99 117 aa12.82□□□□□ -0.36
PCDHA1-203ENST00000504120 C9orf66Q5T8R8 295 aa12.82□□□□□ -0.36
PCDHA1-203ENST00000504120 IGLV2-14P01704 120 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 K7EMT4 169 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 ODF3L1Q8IXM7 274 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 TTC28Q96AY4 2481 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 SPRY2O43597 315 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 AMTNQ6UX39 209 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 ZMAT4Q9H898 229 aa12.81□□□□□ -0.36
PCDHA1-203ENST00000504120 ZFP2Q6ZN57 461 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 MSRB1Q9NZV6 116 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 C9orf47Q6ZRZ4 202 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 IFITM1P13164 125 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 DEFB125Q8N687 156 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 GAGE12HA6NDE8 117 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 K7EQD1 137 aa12.8□□□□□ -0.36
PCDHA1-203ENST00000504120 A0A1W2PNU3 283 aaPredicted RBP12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 COL4A3Q01955 1670 aa12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 TEX48A0A1B0GUV7 120 aa12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 IGHG4P01861 327 aa12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 DAZ2Q13117 558 aaKnown RBP12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 DAZ4Q86SG3 579 aaKnown RBP12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 Q8N7P7 452 aa12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 DAZ3Q9NR90 486 aaKnown RBP12.79□□□□□ -0.36
PCDHA1-203ENST00000504120 TECTAO75443 2155 aa12.78□□□□□ -0.36
PCDHA1-203ENST00000504120 IGKV2D-24A0A075B6R9 120 aa12.78□□□□□ -0.36
PCDHA1-203ENST00000504120 TMEM89A2RUT3 159 aa12.78□□□□□ -0.36
PCDHA1-203ENST00000504120 NTN5Q8WTR8 489 aaPredicted RBP12.78□□□□□ -0.36
PCDHA1-203ENST00000504120 GTSF1Q8WW33 167 aa12.78□□□□□ -0.36
PCDHA1-203ENST00000504120 CGB3P0DN86 165 aa12.78□□□□□ -0.36
PCDHA1-203ENST00000504120 NUPR1O60356 82 aa12.77□□□□□ -0.36
PCDHA1-203ENST00000504120 MED14OSP0DP75 135 aa12.77□□□□□ -0.36
PCDHA1-203ENST00000504120 Q6ZQT7 251 aa12.77□□□□□ -0.36
PCDHA1-203ENST00000504120 TRBV6-1A0A0K0K1D8 114 aa12.77□□□□□ -0.36
PCDHA1-203ENST00000504120 IGKV1OR2-108A0A075B7D4 117 aa12.77□□□□□ -0.37
PCDHA1-203ENST00000504120 ZFP36P26651 326 aaKnown RBP12.77□□□□□ -0.37
PCDHA1-203ENST00000504120 FBXL19-AS1Q494R0 122 aa12.77□□□□□ -0.37
PCDHA1-203ENST00000504120 CDPF1Q6NVV7 123 aa12.77□□□□□ -0.37
PCDHA1-203ENST00000504120 SH2D6Q7Z4S9 175 aa12.77□□□□□ -0.37
PCDHA1-203ENST00000504120 GPHB5Q86YW7 130 aa12.77□□□□□ -0.37
PCDHA1-203ENST00000504120 PRAC2D3DTV9 90 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 ATP6V0E2Q8NHE4 81 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 IGHV4OR15-8A0A075B7B6 117 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 A0A087WW49 117 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 ANKRD29Q8N6D5 301 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 EML6Q6ZMW3 1958 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 MRPL23Q16540 153 aaKnown RBP12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 C5orf38Q86SI9 138 aa12.76□□□□□ -0.37
PCDHA1-203ENST00000504120 C2orf70A6NJV1 201 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 LINC00173Q6ZV60 143 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 ORMDL1Q9P0S3 153 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 GYPEP15421 78 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 Q6ZVH6 145 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 PIFOQ8TCI5 191 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 TRAV12-1A0A0B4J245 112 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 TINCRA0A1B0GVN0 87 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 ATP5G1P05496 136 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 C1orf43Q9BWL3 253 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 A0A0J9YXV3 536 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 IGHG2P01859 326 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 BAALC-AS2P0C853 105 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 SPART-AS1P0CW21 52 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 CTRLP40313 264 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 SHANK1Q9Y566 2161 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 CCL25O15444 150 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 ANKRD39Q53RE8 183 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 Q8N1Y9 231 aa12.75□□□□□ -0.37
PCDHA1-203ENST00000504120 MED13Q9UHV7 2174 aa12.74□□□□□ -0.37
PCDHA1-203ENST00000504120 SIRPDQ9H106 197 aa12.74□□□□□ -0.37
PCDHA1-203ENST00000504120 ICOSQ9Y6W8 199 aa12.74□□□□□ -0.37
PCDHA1-203ENST00000504120 E7EUB6 86 aa12.74□□□□□ -0.37
PCDHA1-203ENST00000504120 C11orf1Q9H5F2 150 aa12.74□□□□□ -0.37
PCDHA1-203ENST00000504120 TRAV4A0A0B4J268 109 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms