RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CST11Q9H112 138 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 GINS2Q9Y248 185 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 KCPQ6ZWJ8 1503 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 PAPPA2Q9BXP8 1791 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 KMT2DO14686 5537 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 CHD7Q9P2D1 2997 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 SUPT6HQ7KZ85 1726 aaKnown RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 DCHS2Q6V1P9 2916 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 MUC5BQ9HC84 5762 aaPredicted RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 KMT2AQ03164 3969 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 CNTRLQ7Z7A1 2325 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 TMEM131LA2VDJ0 1609 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 RNF17Q9BXT8 1623 aaKnown RBP0.46□□□□□ -2.34
CPSF3-205ENST00000489629 MAP3K4Q9Y6R4 1608 aa0.46□□□□□ -2.34
CPSF3-205ENST00000489629 MUC5ACP98088 5654 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 SLIT1O75093 1534 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 LAMA5O15230 3695 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 NUP188Q5SRE5 1749 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TRAV23DV6A0A075B6W5 121 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 LOC107984156A0A0G2JMH3 177 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TRBV7-6A0A0J9YX20 115 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 JMJD7-PLA2G4BH0Y9G9 81 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 NCR3O14931 201 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 IGHV3-33P01772 117 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 SLC25A4P12235 298 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 SDC4P31431 198 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 FXYD4P59646 89 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 MAXP61244 160 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 HAGHLQ6PII5 290 aaPredicted RBP0.45□□□□□ -2.34
CPSF3-205ENST00000489629 AKAP14Q86UN6 197 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 ARL17AQ8IVW1 177 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TMEM229BQ8NBD8 167 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TMEM35BQ8NCS4 154 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 MORN4Q8NDC4 146 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 LXNQ9BS40 222 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TCEAL2Q9H3H9 227 aaPredicted RBP0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TNFSF18Q9UNG2 199 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 GRIN2AQ12879 1464 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 CDK5RAP2Q96SN8 1893 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 KIAA1107Q9UPP5 1409 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 TARBP1Q13395 1621 aaKnown RBP0.45□□□□□ -2.34
CPSF3-205ENST00000489629 ADCY10Q96PN6 1610 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 DMXL2Q8TDJ6 3036 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 SVEP1Q4LDE5 3571 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 F8P00451 2351 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 ANKRD30AQ9BXX3 1397 aa0.45□□□□□ -2.34
CPSF3-205ENST00000489629 ATG2AQ2TAZ0 1938 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 RGPD1P0DJD0 1748 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 KDM5DQ9BY66 1539 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 FAM135AQ9P2D6 1515 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 DOPEY2Q9Y3R5 2298 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 DMBT1Q9UGM3 2413 aaPredicted RBP0.44□□□□□ -2.34
CPSF3-205ENST00000489629 MDN1Q9NU22 5596 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 DSTQ03001 7570 aaKnown RBP0.44□□□□□ -2.34
CPSF3-205ENST00000489629 RALGAPBQ86X10 1494 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 FAT3Q8TDW7 4589 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 A0A096LPI6 279 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 C3orf85A0A1B0GTC6 90 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 LOC105371267A0A1B0GV96 52 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 A0A1B0GW64 132 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 TRACP01848 142 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 MT-ND4LP03901 98 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 TCRAP04437 139 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 SLC25A5P05141 298 aaKnown RBP0.44□□□□□ -2.34
CPSF3-205ENST00000489629 RPL22P35268 128 aaKnown RBP0.44□□□□□ -2.34
CPSF3-205ENST00000489629 NDUFA6P56556 154 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 BLCAPP62952 87 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 CSAG1Q6PB30 78 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 C5orf17Q8NAS9 161 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 PLPP5Q8NEB5 264 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 OR4B1Q8NGF8 309 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 OR51A4Q8NGJ6 313 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 OR10AC1Q8NH08 325 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 ZNF431Q8TF32 576 aaPredicted RBP0.44□□□□□ -2.34
CPSF3-205ENST00000489629 NAT14Q8WUY8 206 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 MCEEQ96PE7 176 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 ERBINQ96RT1 1412 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 ABCA3Q99758 1704 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 TRIOO75962 3097 aa0.44□□□□□ -2.34
CPSF3-205ENST00000489629 TULP4Q9NRJ4 1543 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 ITSN2Q9NZM3 1697 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 A2MP01023 1474 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 LRRC37A3O60309 1634 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 CASZ1Q86V15 1759 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 MYH13Q9UKX3 1938 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.43□□□□□ -2.34
CPSF3-205ENST00000489629 TRAV36DV7A0A075B6V5 113 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 A0A0J9YY99 117 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 C5orf58C9J3I9 102 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 TSTD3H0UI37 97 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 PFDN1O60925 122 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 FAM107AO95990 144 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 HBDP02042 147 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 CCL4P13236 92 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 TPT1P13693 172 aaKnown RBP0.43□□□□□ -2.34
CPSF3-205ENST00000489629 RPS28P62857 69 aaKnown RBP0.43□□□□□ -2.34
CPSF3-205ENST00000489629 OR8B8Q15620 311 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 NEDD8Q15843 81 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 OCIAD2Q56VL3 154 aa0.43□□□□□ -2.34
CPSF3-205ENST00000489629 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 154.7 ms