RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 SLC25A29Q8N8R3 303 aa5.52□□□□□ -1.53
USP48-206ENST00000464577 OR10J6PQ8NGY7 276 aa5.52□□□□□ -1.53
USP48-206ENST00000464577 LINC01560Q8TB33 94 aa5.52□□□□□ -1.53
USP48-206ENST00000464577 SIRPDQ9H106 197 aa5.52□□□□□ -1.53
USP48-206ENST00000464577 SPENQ96T58 3664 aaKnown RBP5.52□□□□□ -1.53
USP48-206ENST00000464577 PKDREJQ9NTG1 2253 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 IGHV3-49A0A0A0MS15 119 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 SOCS3O14543 225 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 CFC1BP0CG36 223 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 CFC1P0CG37 223 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 ANXA2RQ3ZCQ2 193 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 KLHL30-AS1Q8NEE0 82 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 PTH2Q96A98 100 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 KIF25-AS1Q9Y6Z4 181 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 FAM223BA6NKX1 122 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 LY6HO94772 140 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 IGF1P05019 195 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 POLR2KP53803 58 aaKnown RBP5.51□□□□□ -1.53
USP48-206ENST00000464577 Q5PR19 223 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 C11orf71Q6IPW1 123 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 FAM223AQ8IWN6 122 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 ANKRD29Q8N6D5 301 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 WFDC12Q8WWY7 111 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 AJUBAQ96IF1 538 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 LINC01600Q96MT4 127 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 AMELXQ99217 191 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 PRO1854Q9UHT4 67 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 TP53TG1Q9Y2A0 90 aa5.51□□□□□ -1.53
USP48-206ENST00000464577 ROS1P08922 2347 aa5.5□□□□□ -1.53
USP48-206ENST00000464577 G3V318 75 aa5.5□□□□□ -1.53
USP48-206ENST00000464577 RNASE3P12724 160 aaKnown RBP5.5□□□□□ -1.53
USP48-206ENST00000464577 UBE2E1P51965 193 aa5.5□□□□□ -1.53
USP48-206ENST00000464577 TSPEAR-AS2P59090 65 aa5.5□□□□□ -1.53
USP48-206ENST00000464577 LINC00315P59091 139 aa5.5□□□□□ -1.53
USP48-206ENST00000464577 A0A0B4J2C4 111 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 VCYO14598 125 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 P0DMU3 169 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 FAM231AP0DMU4 169 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 FAM231CP0DMU5 169 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 ZFP36P26651 326 aaKnown RBP5.49□□□□□ -1.53
USP48-206ENST00000464577 CRIP2P52943 208 aaPredicted RBP5.49□□□□□ -1.53
USP48-206ENST00000464577 ZNF876PQ49A33 203 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 PRR30Q53SZ7 412 aaPredicted RBP5.49□□□□□ -1.53
USP48-206ENST00000464577 C19orf54Q5BKX5 351 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 SFTA2Q6UW10 78 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 Q6ZS46 218 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 CITED1Q99966 193 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 TRBV6-5A0A0K0K1A5 114 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 J3QQQ9 107 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 NDUFA4O00483 81 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 LGALS3P17931 250 aaKnown RBP5.49□□□□□ -1.53
USP48-206ENST00000464577 ZFAND6Q6FIF0 208 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 RNF183Q96D59 192 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 KIR2DL4Q99706 377 aa5.49□□□□□ -1.53
USP48-206ENST00000464577 ZZEF1O43149 2961 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 LINC01548A6NM66 108 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 FAM90A27PA6NNH2 459 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 J3KRW8 73 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 LEPROTO15243 131 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 SPRY2O43597 315 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 SLC25A20O43772 301 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 IGHV1-69P01742 117 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 SCGB1C2P0DMR2 95 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 SRD5A1P18405 259 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 RNASE4P34096 147 aaKnown RBP5.48□□□□□ -1.53
USP48-206ENST00000464577 ARL3P36405 182 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 SUMO4Q6EEV6 95 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 C5orf56Q8N8D9 126 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 TMEM263Q8WUH6 116 aaKnown RBP5.48□□□□□ -1.53
USP48-206ENST00000464577 ANAPC13Q9BS18 74 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 LOC400499M0QZD8 3231 aa5.48□□□□□ -1.53
USP48-206ENST00000464577 A0A0J9YX75 114 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 TRBV27A0A0K0K1C4 114 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 LGALS9O00182 355 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 GNRH2O43555 120 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 IGHV3-33P01772 117 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 GRNP28799 593 aaKnown RBP5.47□□□□□ -1.53
USP48-206ENST00000464577 SAA4P35542 130 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 RHOHQ15669 191 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 TMEM170BQ5T4T1 132 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 TEX29Q8N6K0 151 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 ZNRF2Q8NHG8 242 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.47□□□□□ -1.53
USP48-206ENST00000464577 TRAV41A0A0B4J266 112 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 TMEM223A0PJW6 202 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 KLLNB2CW77 178 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 BRI3O95415 125 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 EMP1P54849 157 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 RPL39P62891 51 aaKnown RBP5.47□□□□□ -1.53
USP48-206ENST00000464577 NSUN5P1Q3KNT7 163 aa5.47□□□□□ -1.53
USP48-206ENST00000464577 A4D1N5 150 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 SDHAF1A6NFY7 115 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 C9JAW5 83 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 RHODO00212 210 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 EIF4EBP3O60516 100 aaPredicted RBP5.46□□□□□ -1.53
USP48-206ENST00000464577 RPL13AP40429 203 aaKnown RBP5.46□□□□□ -1.53
USP48-206ENST00000464577 GAGE5Q13069 117 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 GAGE6Q13070 117 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 ATXN8Q156A1 80 aa5.46□□□□□ -1.53
USP48-206ENST00000464577 Q6Q795 121 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms