RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SUN5Q8TC36 379 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 NTN5Q8WTR8 489 aaPredicted RBP4.8□□□□□ -1.64
VPS41-208ENST00000448833 FRZBQ92765 325 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 RAB24Q969Q5 203 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 AQP10Q96PS8 301 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 KRTAP4-5Q9BYR2 181 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 EPDR1Q9UM22 224 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 HSPG2P98160 4391 aa4.8□□□□□ -1.64
VPS41-208ENST00000448833 A0A087WWC5 75 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 SCO2A0A1W2PP80 73 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 A0A1W2PRE2 83 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 FABP5P3A8MUU1 101 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 A8MWV9 139 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 IBA57-AS1B1ANH7 110 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 RS1O15537 224 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 GCGP01275 180 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 SEC11BP0C7V7 166 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 GCSHP23434 173 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 S100A4P26447 101 aaKnown RBP4.79□□□□□ -1.64
VPS41-208ENST00000448833 GCHFRP30047 84 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 RAB2AP61019 212 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 SUMO1P63165 101 aaKnown RBP4.79□□□□□ -1.64
VPS41-208ENST00000448833 FLI1Q01543 452 aaPredicted RBP4.79□□□□□ -1.64
VPS41-208ENST00000448833 LAGE3Q14657 143 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 OR10J3Q5JRS4 329 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 TOR2AQ5JU69 321 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 ZFP2Q6ZN57 461 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 WFDC10BQ8IUB3 73 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 CYB561D1Q8N8Q1 229 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 SLC25A29Q8N8R3 303 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 TMEM75Q8N9X5 138 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 TM2D2Q9BX73 214 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 MED28Q9H204 178 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 WFDC1Q9HC57 220 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 PSG8Q9UQ74 426 aa4.79□□□□□ -1.64
VPS41-208ENST00000448833 LRP1BQ9NZR2 4599 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 TRAV8-3A0A0A6YYJ7 113 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 TRAV8-1A0A0A6YYK1 113 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 F6UZH7 168 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 HMGB3O15347 200 aaKnown RBP4.78□□□□□ -1.64
VPS41-208ENST00000448833 PTTG1O95997 202 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 IFNA7P01567 189 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 ATP6V0CP27449 155 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 FGF8P55075 233 aaPredicted RBP4.78□□□□□ -1.64
VPS41-208ENST00000448833 LELP1Q5T871 98 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 CFAP126Q5VTH2 177 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 PRNTQ86SH4 94 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 HSD17B11Q8NBQ5 300 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 ATP6V0E2Q8NHE4 81 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 HIST1H2BAQ96A08 127 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 TVP23CQ96ET8 276 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 TMEM70Q9BUB7 260 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 GTSF1LQ9H1H1 148 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 TNFRSF18Q9Y5U5 241 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 COX11Q9Y6N1 276 aa4.78□□□□□ -1.64
VPS41-208ENST00000448833 IGLV5-52A0A0A0MRZ9 124 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 C1QBP02746 253 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 GNG5P63218 68 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 SYT8Q8NBV8 401 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 C9orf85Q96MD7 179 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 TCEAL7Q9BRU2 100 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 AP5S1Q9NUS5 200 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 IL36BQ9NZH7 164 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 ZFP30Q9Y2G7 519 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 ALG5Q9Y673 324 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 URGCP-MRPS24S4R325 110 aa4.77□□□□□ -1.65
VPS41-208ENST00000448833 LOC100131303A0A0U1RQF7 123 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 CTXND1A0A1B0GTU2 59 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 PGPEP1LA6NFU8 196 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 RHODO00212 210 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 GIPP09681 153 aaPredicted RBP4.76□□□□□ -1.65
VPS41-208ENST00000448833 INAFM2P0DMQ5 153 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 ASIPP42127 132 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 ZNF80P51504 273 aaPredicted RBP4.76□□□□□ -1.65
VPS41-208ENST00000448833 XGP55808 180 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 LGALSLQ3ZCW2 172 aaPredicted RBP4.76□□□□□ -1.65
VPS41-208ENST00000448833 ZNF506Q5JVG8 444 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 STOML3Q8TAV4 291 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 RMI2Q96E14 147 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 SGK494Q96LW2 274 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 DNAH5Q8TE73 4624 aa4.76□□□□□ -1.65
VPS41-208ENST00000448833 APOBP04114 4563 aaKnown RBP4.75□□□□□ -1.65
VPS41-208ENST00000448833 LRCOL1A6NCL2 159 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 B4DEV8 164 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 GGTLC3B5MD39 225 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 EIF3GO75821 320 aaKnown RBP eCLIP4.75□□□□□ -1.65
VPS41-208ENST00000448833 IGLV2-11P01706 119 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 RNASE3P12724 160 aaKnown RBP4.75□□□□□ -1.65
VPS41-208ENST00000448833 ELOBQ15370 118 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 DNLZQ5SXM8 178 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 AKR1C8PQ5T2L2 129 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 KCNIP4Q6PIL6 250 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 Q8N814 137 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.75□□□□□ -1.65
VPS41-208ENST00000448833 FMC1Q96HJ9 113 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 ARL2-SNX15V9GYD0 113 aa4.75□□□□□ -1.65
VPS41-208ENST00000448833 IGHV3-73A0A0B4J1V6 119 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 PEX7O00628 323 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 IGHV3-30P01768 117 aa4.74□□□□□ -1.65
VPS41-208ENST00000448833 IGHV3-33P01772 117 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms