RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 KIAA1549LQ6ZVL6 1849 aa12.4□□□□□ -0.42
USP42-201ENST00000306177 A0A096LPF7 62 aa12.4□□□□□ -0.42
USP42-201ENST00000306177 TEX22C9J3V5 150 aa12.4□□□□□ -0.42
USP42-201ENST00000306177 NXPH4O95158 308 aa12.4□□□□□ -0.42
USP42-201ENST00000306177 ANGP03950 147 aaKnown RBP12.4□□□□□ -0.42
USP42-201ENST00000306177 CEND1Q8N111 149 aa12.4□□□□□ -0.42
USP42-201ENST00000306177 RNF152Q8N8N0 203 aa12.4□□□□□ -0.42
USP42-201ENST00000306177 SIVA1O15304 175 aa12.4□□□□□ -0.43
USP42-201ENST00000306177 Q8N7P7 452 aa12.4□□□□□ -0.43
USP42-201ENST00000306177 H3BMM0 161 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 CRYGCP07315 174 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 SPINK8P0C7L1 97 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 INAFM2P0DMQ5 153 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 BVES-AS1Q5T3Y7 98 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 UBE2WQ96B02 151 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 PLA2G2EQ9NZK7 142 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 GTSF1LQ9H1H1 148 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 PRO1854Q9UHT4 67 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 PRSS29PA6NIE9 313 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 ZFP36P26651 326 aaKnown RBP12.39□□□□□ -0.43
USP42-201ENST00000306177 NRGNQ92686 78 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 RMI2Q96E14 147 aa12.39□□□□□ -0.43
USP42-201ENST00000306177 ZNF48Q96MX3 618 aaPredicted RBP12.39□□□□□ -0.43
USP42-201ENST00000306177 RNASE13Q5GAN3 156 aaKnown RBP12.39□□□□□ -0.43
USP42-201ENST00000306177 WI2-2373I1.2A0A1W2PRP0 233 aa12.38□□□□□ -0.43
USP42-201ENST00000306177 FGF6P10767 208 aa12.38□□□□□ -0.43
USP42-201ENST00000306177 FAM167A-AS1Q96KT0 104 aa12.38□□□□□ -0.43
USP42-201ENST00000306177 APRG1Q8IVJ8 170 aa12.38□□□□□ -0.43
USP42-201ENST00000306177 PIEZO1Q92508 2521 aa12.38□□□□□ -0.43
USP42-201ENST00000306177 SOCS3O14543 225 aa12.38□□□□□ -0.43
USP42-201ENST00000306177 CITED1Q99966 193 aa12.37□□□□□ -0.43
USP42-201ENST00000306177 GATA1P15976 413 aaPredicted RBP12.36□□□□□ -0.43
USP42-201ENST00000306177 NCKAP5O14513 1909 aa12.36□□□□□ -0.43
USP42-201ENST00000306177 KMT2EQ8IZD2 1858 aa12.36□□□□□ -0.43
USP42-201ENST00000306177 TRAV13-2A0A0B4J235 113 aa12.36□□□□□ -0.43
USP42-201ENST00000306177 C9orf66Q5T8R8 295 aa12.36□□□□□ -0.43
USP42-201ENST00000306177 COA6Q5JTJ3 125 aaKnown RBP12.36□□□□□ -0.43
USP42-201ENST00000306177 SPRY2O43597 315 aa12.35□□□□□ -0.43
USP42-201ENST00000306177 PTPN13Q12923 2485 aa12.35□□□□□ -0.43
USP42-201ENST00000306177 K7EP34 96 aa12.35□□□□□ -0.43
USP42-201ENST00000306177 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.35□□□□□ -0.43
USP42-201ENST00000306177 IGKV2-29A2NJV5 120 aaPredicted RBP12.35□□□□□ -0.43
USP42-201ENST00000306177 F8W1H4 67 aa12.35□□□□□ -0.43
USP42-201ENST00000306177 COL4A4P53420 1690 aaPredicted RBP12.35□□□□□ -0.43
USP42-201ENST00000306177 SUMO4Q6EEV6 95 aa12.35□□□□□ -0.43
USP42-201ENST00000306177 SIRPDQ9H106 197 aa12.35□□□□□ -0.43
USP42-201ENST00000306177 K7EMT4 169 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 CLPSL2Q6UWE3 100 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 BOD1L2Q8IYS8 172 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 SPANXA1Q9NS26 97 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 IGKV1OR2-108A0A075B7D4 117 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 A0A0J9YY99 117 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 EDA2RQ9HAV5 297 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 IGHV4OR15-8A0A075B7B6 117 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 A0A087WW49 117 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 PPDPFLQ8WWR9 84 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 C16orf74Q96GX8 76 aa12.34□□□□□ -0.43
USP42-201ENST00000306177 A0A1W2PPM0 123 aa12.33□□□□□ -0.44
USP42-201ENST00000306177 E7EUB6 86 aa12.33□□□□□ -0.44
USP42-201ENST00000306177 RPL39LQ96EH5 51 aaKnown RBP12.33□□□□□ -0.44
USP42-201ENST00000306177 ZMAT4Q9H898 229 aa12.33□□□□□ -0.44
USP42-201ENST00000306177 SCRT2Q9NQ03 307 aa12.33□□□□□ -0.44
USP42-201ENST00000306177 PRR14LQ5THK1 2151 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 TMEM89A2RUT3 159 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 IGHG2P01859 326 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 C9orf47Q6ZRZ4 202 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 MSRB1Q9NZV6 116 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 NCOR2Q9Y618 2525 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 DYSFO75923 2080 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 XCL1P47992 114 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 LAMA3Q16787 3333 aa12.32□□□□□ -0.44
USP42-201ENST00000306177 ETDBQ3ZM63 59 aa12.31□□□□□ -0.44
USP42-201ENST00000306177 TMEM126AQ9H061 195 aa12.31□□□□□ -0.44
USP42-201ENST00000306177 MRPL36Q9P0J6 103 aaKnown RBP12.31□□□□□ -0.44
USP42-201ENST00000306177 C2orf70A6NJV1 201 aa12.31□□□□□ -0.44
USP42-201ENST00000306177 PRAC2D3DTV9 90 aa12.31□□□□□ -0.44
USP42-201ENST00000306177 K7ERJ3 54 aa12.31□□□□□ -0.44
USP42-201ENST00000306177 GPHB5Q86YW7 130 aa12.31□□□□□ -0.44
USP42-201ENST00000306177 NPSP0C0P6 89 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 HIVEP2P31629 2446 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 K7EQD1 137 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 SLC25A29Q8N8R3 303 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 C12orf74Q32Q52 190 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 GTSF1Q8WW33 167 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 C11orf1Q9H5F2 150 aa12.3□□□□□ -0.44
USP42-201ENST00000306177 K7EP13 123 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 Q9H8V8 135 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 PIFOQ8TCI5 191 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 CRLF1O75462 422 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 UTF1Q5T230 341 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 ZFP2Q6ZN57 461 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 PCP2Q8IVA1 136 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 PCNX3Q9H6A9 2034 aa12.29□□□□□ -0.44
USP42-201ENST00000306177 Q6ZQT7 251 aa12.28□□□□□ -0.44
USP42-201ENST00000306177 TEX48A0A1B0GUV7 120 aa12.28□□□□□ -0.44
USP42-201ENST00000306177 CARD19Q96LW7 228 aa12.28□□□□□ -0.44
USP42-201ENST00000306177 SONP18583 2426 aaKnown RBP12.28□□□□□ -0.44
USP42-201ENST00000306177 P0C879 139 aa12.28□□□□□ -0.44
USP42-201ENST00000306177 HERV-K104P63124 156 aa12.28□□□□□ -0.44
USP42-201ENST00000306177 IGKV2D-24A0A075B6R9 120 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms