RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 C9orf153Q5TBE3 101 aa7.84□□□□□ -1.15
CLDN1-201ENST00000295522 TP53TG1Q9Y2A0 90 aa7.84□□□□□ -1.15
CLDN1-201ENST00000295522 MUC6Q6W4X9 2439 aa7.84□□□□□ -1.15
CLDN1-201ENST00000295522 TEX36Q5VZQ5 186 aa7.84□□□□□ -1.15
CLDN1-201ENST00000295522 NEXN-AS1Q8NBZ9 246 aa7.84□□□□□ -1.15
CLDN1-201ENST00000295522 RAB1BQ9H0U4 201 aa7.84□□□□□ -1.15
CLDN1-201ENST00000295522 FAM236AA0A1B0GUQ0 79 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 FAM236BA0A1B0GV22 79 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 MRPS12O15235 138 aaKnown RBP7.83□□□□□ -1.16
CLDN1-201ENST00000295522 RPL39P62891 51 aaKnown RBP7.83□□□□□ -1.16
CLDN1-201ENST00000295522 ATXN8Q156A1 80 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 LINC01620Q4KN68 170 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 VPREB3Q9UKI3 123 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 LOC107984640A0A0U1RRK4 108 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 LOXP28300 417 aaPredicted RBP7.83□□□□□ -1.16
CLDN1-201ENST00000295522 FAM74A4Q5TZK3 123 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 Q6ZS92 163 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 C22orf34Q6ZV56 151 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 ZNF256Q9Y2P7 627 aaPredicted RBP7.83□□□□□ -1.16
CLDN1-201ENST00000295522 TNFRSF18Q9Y5U5 241 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 LAMA5O15230 3695 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 GATA4P43694 442 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 AGPAT4-IT1Q9H0P7 198 aa7.83□□□□□ -1.16
CLDN1-201ENST00000295522 TRAV12-1A0A0B4J245 112 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 ELANEP08246 267 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 PMVKQ15126 192 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 ECSCRQ19T08 205 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 C17orf100A8MU93 164 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 RPL13AP40429 203 aaKnown RBP7.82□□□□□ -1.16
CLDN1-201ENST00000295522 NDPQ00604 133 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 TRAV8-3A0A0A6YYJ7 113 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 DEFB1P60022 68 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 MUSTN1Q8IVN3 82 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 LINC00574Q9H8X3 128 aa7.82□□□□□ -1.16
CLDN1-201ENST00000295522 CENPVL3A0A0U1RRI6 287 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 J3QQQ9 107 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 TSPEAR-AS2P59090 65 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 IGLV3-9A0A075B6K5 115 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 BUB1B-PAK6H3BSN5 160 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 RS1O15537 224 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 IGHV3-30P01768 117 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 LINC00694P0DN24 101 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 IGHV3-30-5P0DP03 117 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 TOMM6Q96B49 74 aa7.81□□□□□ -1.16
CLDN1-201ENST00000295522 KLK5Q9Y337 293 aaPredicted RBP7.81□□□□□ -1.16
CLDN1-201ENST00000295522 OOSP1A8MZH6 123 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 C16orf92Q96LL3 132 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 TRGV11A0A075B6L2 103 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 TMEM178BH3BS89 294 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 DEFB124Q8NES8 71 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 CLEC2BQ92478 149 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 ODF3Q96PU9 254 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 OPRPNQ99935 248 aaPredicted RBP7.8□□□□□ -1.16
CLDN1-201ENST00000295522 SMAD5-AS1Q9Y6J3 95 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 NBR2O15453 112 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 IGF1P05019 195 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 SLC50A1Q9BRV3 221 aa7.8□□□□□ -1.16
CLDN1-201ENST00000295522 A0A087WWL8 130 aa7.79□□□□□ -1.16
CLDN1-201ENST00000295522 TRAV17A0A0B4J275 112 aa7.79□□□□□ -1.16
CLDN1-201ENST00000295522 CD59P13987 128 aa7.79□□□□□ -1.16
CLDN1-201ENST00000295522 IGHV3-33P01772 117 aa7.79□□□□□ -1.16
CLDN1-201ENST00000295522 COX6CP09669 75 aa7.79□□□□□ -1.16
CLDN1-201ENST00000295522 LINC00311Q8N616 119 aa7.79□□□□□ -1.16
CLDN1-201ENST00000295522 SORL1Q92673 2214 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 A0A0U1RRA0 63 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 DPH3P1Q9H4G8 78 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 LINC01619G3V211 115 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 ZNF22P17026 224 aaPredicted RBP7.78□□□□□ -1.16
CLDN1-201ENST00000295522 RNASE4P34096 147 aaKnown RBP7.78□□□□□ -1.16
CLDN1-201ENST00000295522 CLEC19AQ6UXS0 136 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 Q6ZSV7 163 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 SLC25A29Q8N8R3 303 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 EEF1AKMT3Q96AZ1 226 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 CNFNQ9BYD5 112 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 EDA2RQ9HAV5 297 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 C2CD3Q4AC94 2353 aa7.78□□□□□ -1.16
CLDN1-201ENST00000295522 RBAKDNA6NC62 111 aa7.77□□□□□ -1.16
CLDN1-201ENST00000295522 BSPH1Q075Z2 132 aa7.77□□□□□ -1.16
CLDN1-201ENST00000295522 TMEM101Q96IK0 257 aa7.77□□□□□ -1.16
CLDN1-201ENST00000295522 DKK4Q9UBT3 224 aa7.77□□□□□ -1.16
CLDN1-201ENST00000295522 IGHV7-4-1A0A0J9YVY3 117 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 TRIAP1O43715 76 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 IGHG4P01861 327 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 COX6B1P14854 86 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 KLRB1Q12918 225 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 SPXQ9BT56 116 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 CDX4O14627 284 aaPredicted RBP7.77□□□□□ -1.17
CLDN1-201ENST00000295522 THBDP07204 575 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 CRYGBP07316 175 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 CD3EP07766 207 aa7.77□□□□□ -1.17
CLDN1-201ENST00000295522 GNRH2O43555 120 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 C15orf32Q32M92 178 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 ZNF575Q86XF7 245 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 DUX5Q96PT3 197 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 LINC00527Q9UJ94 153 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 OTOGLQ3ZCN5 2332 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.76□□□□□ -1.178e-10■■■■□ 20.2
CLDN1-201ENST00000295522 TRAV41A0A0B4J266 112 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 TRBV10-2A0A0K0K1G8 114 aa7.76□□□□□ -1.17
CLDN1-201ENST00000295522 LINC01546A6NGU7 62 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms