RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DKK2Q9UBU2 259 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 KLHDC3Q9BQ90 382 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 ATP6V0E2Q8NHE4 81 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 NPYP01303 97 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 VOPP1Q96AW1 172 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 H3BQ85 93 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 Q0VG73 95 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 C12orf74Q32Q52 190 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 ZNF833PQ6ZTB9 187 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 NDUFA1O15239 70 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 SMIM27A0A1W2PRY6 76 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 LGALS9BQ3B8N2 356 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 LGALS9CQ6DKI2 356 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 PNRC2Q9NPJ4 139 aaKnown RBP9□□□□□ -0.97
PTPN4-201ENST00000263708 Q6ZWC4 215 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 VPREB3Q9UKI3 123 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 SH2D6Q7Z4S9 175 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 NDUFS7O75251 213 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 C20orf78Q9BR46 151 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 LHFPL1Q86WI0 220 aa9□□□□□ -0.97
PTPN4-201ENST00000263708 A0A0G2JRQ6 117 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 DEFB4AO15263 64 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 PYGO2Q9BRQ0 406 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 SIP14410 1827 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 J3QRE1 110 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 CFC1BP0CG36 223 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 CFC1P0CG37 223 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 DAZ2Q13117 558 aaKnown RBP8.99□□□□□ -0.97
PTPN4-201ENST00000263708 DAZ4Q86SG3 579 aaKnown RBP8.99□□□□□ -0.97
PTPN4-201ENST00000263708 DAZ3Q9NR90 486 aaKnown RBP8.99□□□□□ -0.97
PTPN4-201ENST00000263708 A0A0B4J2C4 111 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 TRBV12-3P01733 135 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 IGHV4-59P01825 116 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 DAND5Q8N907 189 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 PRRC2AP48634 2157 aaKnown RBP8.99□□□□□ -0.97
PTPN4-201ENST00000263708 FAM236AA0A1B0GUQ0 79 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 FAM236BA0A1B0GV22 79 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 HOXB4P17483 251 aaPredicted RBP8.99□□□□□ -0.97
PTPN4-201ENST00000263708 PRSS47A8MTI9 375 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 FAM110AQ9BQ89 295 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 TPSG1Q9NRR2 321 aa8.99□□□□□ -0.97
PTPN4-201ENST00000263708 TRBV6-6A0A0A6YYG2 114 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 C9JQL5 133 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 IGKV1-6A0A0C4DH72 117 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 LINC01620Q4KN68 170 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 MPLKIPQ8TAP9 179 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 ATOX1O00244 68 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 CTSGP08311 255 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 HHLA3Q9XRX5 114 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 SPRY2O43597 315 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 PRR20EP86478 221 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 PRR20CP86479 221 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 PRR20DP86480 221 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 PRR20BP86481 221 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 PRR20AP86496 221 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 WFDC11Q8NEX6 87 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 SORL1Q92673 2214 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 ELANEP08246 267 aa8.98□□□□□ -0.97
PTPN4-201ENST00000263708 K7ENP7 123 aa8.97□□□□□ -0.97
PTPN4-201ENST00000263708 USP17L23D6RBM5 183 aa8.97□□□□□ -0.97
PTPN4-201ENST00000263708 KLF2Q9Y5W3 355 aaPredicted RBP8.97□□□□□ -0.97
PTPN4-201ENST00000263708 FAM208BQ5VWN6 2430 aa8.97□□□□□ -0.97
PTPN4-201ENST00000263708 ATP5G1P05496 136 aa8.97□□□□□ -0.97
PTPN4-201ENST00000263708 C3orf22Q8N5N4 141 aa8.97□□□□□ -0.97
PTPN4-201ENST00000263708 IGKV2-24A0A0C4DH68 120 aa8.97□□□□□ -0.97
PTPN4-201ENST00000263708 RPL39LQ96EH5 51 aaKnown RBP8.97□□□□□ -0.97
PTPN4-201ENST00000263708 DEFB112Q30KQ8 113 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 VWCEQ96DN2 955 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 IGLV3-9A0A075B6K5 115 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 Q6ZRM9 215 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 HCFC1P51610 2035 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 DUX4L9Q6RFH8 374 aaPredicted RBP8.96□□□□□ -0.97
PTPN4-201ENST00000263708 Q6ZS92 163 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 DIRC1Q969H9 104 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 TMEM14CQ9P0S9 112 aa8.96□□□□□ -0.97
PTPN4-201ENST00000263708 ARHGAP32A7KAX9 2087 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 NPSP0C0P6 89 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 RNF144BQ7Z419 303 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 FLVCR1-AS1Q8TAF5 88 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 TRBV10-2A0A0K0K1G8 114 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 PLXNA2O75051 1894 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 J3KT08 172 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 LYPD3O95274 346 aa8.96□□□□□ -0.98
PTPN4-201ENST00000263708 K7EMI3 77 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 IGLL1P15814 213 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 IGLC7A0M8Q6 106 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 MLST8Q9BVC4 326 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 ZNF106Q9H2Y7 1883 aaKnown RBP8.95□□□□□ -0.98
PTPN4-201ENST00000263708 H0YGX0 51 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 DEFB135Q30KP9 77 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 CCL25O15444 150 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 BDP1A6H8Y1 2624 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 PRR15LQ9BU68 103 aa8.95□□□□□ -0.98
PTPN4-201ENST00000263708 TAX1BP3O14907 124 aa8.94□□□□□ -0.98
PTPN4-201ENST00000263708 V9GYV3 84 aa8.94□□□□□ -0.98
PTPN4-201ENST00000263708 PCDH15Q96QU1 1955 aa8.94□□□□□ -0.98
PTPN4-201ENST00000263708 A0A096LNI7 61 aa8.94□□□□□ -0.98
PTPN4-201ENST00000263708 PLXNA3P51805 1871 aa8.94□□□□□ -0.98
PTPN4-201ENST00000263708 A0A0J9YWU9 116 aa8.94□□□□□ -0.98
PTPN4-201ENST00000263708 MALRD1Q5VYJ5 2156 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms