RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	RPH3AL	Q9UNE2	315 aa		12.83	□□□□□ -0.36
IRF3-222	ENST00000599144	TRGV11	A0A075B6L2	103 aa		12.82	□□□□□ -0.36
IRF3-222	ENST00000599144	SIX6	O95475	246 aa		12.82	□□□□□ -0.36
IRF3-222	ENST00000599144	CSN1S1	P47710	185 aa		12.82	□□□□□ -0.36
IRF3-222	ENST00000599144	HYLS1	Q96M11	299 aa		12.82	□□□□□ -0.36
IRF3-222	ENST00000599144	TRBV7-9	A0A0J9YWB2	115 aa		12.81	□□□□□ -0.36
IRF3-222	ENST00000599144		F6UZH7	168 aa		12.81	□□□□□ -0.36
IRF3-222	ENST00000599144		K7EP13	123 aa		12.81	□□□□□ -0.36
IRF3-222	ENST00000599144		Q8N3U1	123 aa		12.81	□□□□□ -0.36
IRF3-222	ENST00000599144	OR5AC2	Q9NZP5	309 aa		12.81	□□□□□ -0.36
IRF3-222	ENST00000599144	IBA57-AS1	B1ANH7	110 aa		12.8	□□□□□ -0.36
IRF3-222	ENST00000599144	DIRC3	C9JPN6	131 aa		12.8	□□□□□ -0.36
IRF3-222	ENST00000599144	GATA1	P15976	413 aa	Predicted RBP	12.8	□□□□□ -0.36
IRF3-222	ENST00000599144	UBE2L3	P68036	154 aa	Known RBP	12.8	□□□□□ -0.36
IRF3-222	ENST00000599144	NTN5	Q8WTR8	489 aa	Predicted RBP	12.8	□□□□□ -0.36
IRF3-222	ENST00000599144	WDR61	Q9GZS3	305 aa	Known RBP	12.8	□□□□□ -0.36
IRF3-222	ENST00000599144	IGHV3-73	A0A0B4J1V6	119 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144	RBAKDN	A6NC62	111 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144		M0R2P5	195 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144	TYMS	P04818	313 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144	LRRC37A5P	Q49AS3	106 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144	LINC01556	Q5JQF7	62 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144	OR10J3	Q5JRS4	329 aa		12.79	□□□□□ -0.36
IRF3-222	ENST00000599144		H0YIZ8	118 aa		12.78	□□□□□ -0.36
IRF3-222	ENST00000599144	LECT2	O14960	151 aa		12.78	□□□□□ -0.36
IRF3-222	ENST00000599144	TVP23C	Q96ET8	276 aa		12.78	□□□□□ -0.36
IRF3-222	ENST00000599144	TRAV8-1	A0A0A6YYK1	113 aa		12.77	□□□□□ -0.37
IRF3-222	ENST00000599144	DPPA3	Q6W0C5	159 aa		12.77	□□□□□ -0.37
IRF3-222	ENST00000599144	TDRG1	Q3Y452	100 aa		12.76	□□□□□ -0.37
IRF3-222	ENST00000599144	LINC01620	Q4KN68	170 aa		12.76	□□□□□ -0.37
IRF3-222	ENST00000599144	LINC00528	Q8N1L1	170 aa		12.76	□□□□□ -0.37
IRF3-222	ENST00000599144	SLC25A29	Q8N8R3	303 aa		12.76	□□□□□ -0.37
IRF3-222	ENST00000599144	SGK494	Q96LW2	274 aa		12.76	□□□□□ -0.37
IRF3-222	ENST00000599144	TRAV8-6	A0A0B4J262	113 aa		12.75	□□□□□ -0.37
IRF3-222	ENST00000599144	TIRAP	P58753	221 aa		12.75	□□□□□ -0.37
IRF3-222	ENST00000599144	GNG5	P63218	68 aa		12.75	□□□□□ -0.37
IRF3-222	ENST00000599144	FFAR4	Q5NUL3	377 aa		12.75	□□□□□ -0.37
IRF3-222	ENST00000599144	GOLT1A	Q6ZVE7	132 aa		12.75	□□□□□ -0.37
IRF3-222	ENST00000599144	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	12.74	□□□□□ -0.37
IRF3-222	ENST00000599144	PGP	A6NDG6	321 aa		12.74	□□□□□ -0.37
IRF3-222	ENST00000599144	FBLL1	A6NHQ2	334 aa	Known RBP	12.74	□□□□□ -0.37
IRF3-222	ENST00000599144	SSNA1	O43805	119 aa		12.74	□□□□□ -0.37
IRF3-222	ENST00000599144	LENEP	Q9Y5L5	61 aa		12.74	□□□□□ -0.37
IRF3-222	ENST00000599144	HMCN2	Q8NDA2	5059 aa		12.73	□□□□□ -0.37
IRF3-222	ENST00000599144	TRAV21	A0A0B4J279	112 aa		12.73	□□□□□ -0.37
IRF3-222	ENST00000599144	SH2D6	Q7Z4S9	175 aa		12.73	□□□□□ -0.37
IRF3-222	ENST00000599144	SMIM3	Q9BZL3	60 aa		12.73	□□□□□ -0.37
IRF3-222	ENST00000599144	C17orf112	F2Z3M2	114 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	CFAP126	Q5VTH2	177 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	CMTM2	Q8TAZ6	248 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	NMES1	Q9C002	83 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	SDF2L1	Q9HCN8	221 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	TREM1	Q9NP99	234 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	OTOR	Q9NRC9	128 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	KCNIP2	Q9NS61	270 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	C11orf21	Q9P2W6	132 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	ALG5	Q9Y673	324 aa		12.72	□□□□□ -0.37
IRF3-222	ENST00000599144	RS1	O15537	224 aa		12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	PLA2G1B	P04054	148 aa	Known RBP	12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	PFN1	P07737	140 aa	Known RBP	12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	ZNF876P	Q49A33	203 aa		12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	KHDC3L	Q587J8	217 aa		12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	LELP1	Q5T871	98 aa		12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	TMEM75	Q8N9X5	138 aa		12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	MBD2	Q9UBB5	411 aa		12.71	□□□□□ -0.37
IRF3-222	ENST00000599144	LRP1	Q07954	4544 aa	Known RBP	12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	KRTAP29-1	A8MX34	341 aa	Predicted RBP	12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	HMGB3	O15347	200 aa	Known RBP	12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	ZNF80	P51504	273 aa	Predicted RBP	12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	TMED6	Q8WW62	240 aa		12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	ASB13	Q8WXK3	278 aa		12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	ATP5S	Q99766	215 aa		12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	PRADC1	Q9BSG0	188 aa		12.7	□□□□□ -0.38
IRF3-222	ENST00000599144	RHOH	Q15669	191 aa		12.69	□□□□□ -0.38
IRF3-222	ENST00000599144		Q6ZSA8	131 aa		12.69	□□□□□ -0.38
IRF3-222	ENST00000599144	MED28	Q9H204	178 aa		12.69	□□□□□ -0.38
IRF3-222	ENST00000599144	PGPEP1L	A6NFU8	196 aa		12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	CYCS	P99999	105 aa	Known RBP	12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	DAZ4	Q86SG3	579 aa	Known RBP	12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	ATP6V0E2	Q8NHE4	81 aa		12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	BAALC	Q8WXS3	180 aa		12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	DNAJC30	Q96LL9	226 aa		12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	GTSF1L	Q9H1H1	148 aa		12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	DAZ3	Q9NR90	486 aa	Known RBP	12.68	□□□□□ -0.38
IRF3-222	ENST00000599144		Q9UF83	564 aa		12.68	□□□□□ -0.38
IRF3-222	ENST00000599144	TRBV6-4	A0A1B0GX49	114 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	GAGE12J	A6NER3	117 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	C1QB	P02746	253 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	TAS2R45	P59539	299 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	GAGE1	Q13065	139 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	GAGE4	Q13068	117 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	GAGE5	Q13069	117 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	GAGE13	Q4V321	117 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	SCX	Q7RTU7	201 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	KCNS1	Q96KK3	526 aa		12.67	□□□□□ -0.38
IRF3-222	ENST00000599144	RAB2A	P61019	212 aa		12.66	□□□□□ -0.38
IRF3-222	ENST00000599144	ZNF506	Q5JVG8	444 aa		12.66	□□□□□ -0.38
IRF3-222	ENST00000599144	TM2D2	Q9BX73	214 aa		12.66	□□□□□ -0.38
IRF3-222	ENST00000599144	WFDC1	Q9HC57	220 aa		12.66	□□□□□ -0.38
IRF3-222	ENST00000599144	HSPB11	Q9Y547	144 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms