RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CAMPP49913 170 aa15.78■□□□□ 0.12
CLN3-209ENST00000561689 RPS20P60866 119 aaKnown RBP15.78■□□□□ 0.12
CLN3-209ENST00000561689 NAGKQ9UJ70 344 aa15.78■□□□□ 0.12
CLN3-209ENST00000561689 TRAV21A0A0B4J279 112 aa15.77■□□□□ 0.12
CLN3-209ENST00000561689 M0R2Z0 102 aa15.77■□□□□ 0.12
CLN3-209ENST00000561689 ODF3L2Q3SX64 289 aa15.77■□□□□ 0.12
CLN3-209ENST00000561689 TMEM136Q6ZRR5 245 aa15.77■□□□□ 0.12
CLN3-209ENST00000561689 SSTP61278 116 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 ODF3Q96PU9 254 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 GNB1LQ9BYB4 327 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 TRAV12-2A0A075B6T6 113 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 MUC21A0A0G2JKD1 596 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 MUC21A0A140T8X8 626 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 A0A1B0GXF2 115 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 H3BMM0 161 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 ARMS2P0C7Q2 107 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 HLA-DRB4P13762 266 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 LEPP41159 167 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 SPINK13Q1W4C9 94 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 PRR31Q5SQ13 230 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 MUC21Q5SSG8 566 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 LYZL1Q6UWQ5 148 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 ATP5L2Q7Z4Y8 100 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 MRPL18Q9H0U6 180 aaKnown RBP15.76■□□□□ 0.11
CLN3-209ENST00000561689 HLA-DRB4X5D2U9 266 aa15.76■□□□□ 0.11
CLN3-209ENST00000561689 AGRNO00468 2067 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 Q6AWC8 147 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 WDR73Q6P4I2 378 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 AMTNQ6UX39 209 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 AMBPP02760 352 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 HBBP68871 147 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 FER1L6-AS1Q8NA97 138 aa15.75■□□□□ 0.11
CLN3-209ENST00000561689 PACRGQ96M98 296 aaPredicted RBP15.75■□□□□ 0.11
CLN3-209ENST00000561689 A0A1B0GUT8 65 aa15.74■□□□□ 0.11
CLN3-209ENST00000561689 FXYD7P58549 80 aa15.74■□□□□ 0.11
CLN3-209ENST00000561689 TRAV12-3A0A0B4J271 114 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 IGLC6P0CF74 106 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 CDKN1BP46527 198 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 RASL11AQ6T310 242 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 RBMY1BA6NDE4 496 aaKnown RBP15.73■□□□□ 0.11
CLN3-209ENST00000561689 RBMY1EA6NEQ0 496 aaKnown RBP15.73■□□□□ 0.11
CLN3-209ENST00000561689 RBMY1DP0C7P1 496 aaKnown RBP15.73■□□□□ 0.11
CLN3-209ENST00000561689 COX19Q49B96 90 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 OR2K2Q8NGT1 345 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 SSBP4Q9BWG4 385 aaPredicted RBP15.73■□□□□ 0.11
CLN3-209ENST00000561689 GSN-AS1Q9NRJ2 163 aa15.73■□□□□ 0.11
CLN3-209ENST00000561689 C7orf71A4D174 169 aa15.72■□□□□ 0.11
CLN3-209ENST00000561689 OR11H12B2RN74 326 aa15.72■□□□□ 0.11
CLN3-209ENST00000561689 TSPOP30536 169 aa15.72■□□□□ 0.11
CLN3-209ENST00000561689 ANXA2RQ3ZCQ2 193 aa15.72■□□□□ 0.11
CLN3-209ENST00000561689 MT-ND6P03923 174 aa15.71■□□□□ 0.11
CLN3-209ENST00000561689 BORCS7Q96B45 105 aa15.71■□□□□ 0.11
CLN3-209ENST00000561689 HLA-DQA1P01909 254 aa15.71■□□□□ 0.1
CLN3-209ENST00000561689 CD7P09564 240 aa15.71■□□□□ 0.1
CLN3-209ENST00000561689 RIGQ13278 110 aa15.71■□□□□ 0.1
CLN3-209ENST00000561689 TMEM256Q8N2U0 113 aa15.71■□□□□ 0.1
CLN3-209ENST00000561689 ZNF324O75467 553 aaPredicted RBP15.7■□□□□ 0.1
CLN3-209ENST00000561689 CTRLP40313 264 aa15.7■□□□□ 0.1
CLN3-209ENST00000561689 SLAQ13239 276 aa15.7■□□□□ 0.1
CLN3-209ENST00000561689 KIAA1644Q3SXP7 199 aa15.7■□□□□ 0.1
CLN3-209ENST00000561689 A8MTW9 85 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 NUPR1O60356 82 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 APCSP02743 223 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 BEAN1Q3B7T3 259 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 S100A12P80511 92 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 TP53TG3Q9ULZ0 132 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 TRRAPQ9Y4A5 3859 aa15.69■□□□□ 0.1
CLN3-209ENST00000561689 GNRH2O43555 120 aa15.68■□□□□ 0.1
CLN3-209ENST00000561689 TIMM8BQ9Y5J9 83 aaPredicted RBP15.68■□□□□ 0.1
CLN3-209ENST00000561689 WFDC10AQ9H1F0 79 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 NOTCH3Q9UM47 2321 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 H3BVH4 76 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 NTF3P20783 257 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 TWIST1Q15672 202 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 FAM159AQ6UWV7 190 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 STHQ8IWL8 128 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 ZNF747Q9BV97 191 aa15.67■□□□□ 0.1
CLN3-209ENST00000561689 F2Z2F3 143 aa15.66■□□□□ 0.1
CLN3-209ENST00000561689 CRXO43186 299 aaPredicted RBP15.66■□□□□ 0.1
CLN3-209ENST00000561689 C9orf66Q5T8R8 295 aa15.66■□□□□ 0.1
CLN3-209ENST00000561689 C3orf56Q8N813 242 aa15.66■□□□□ 0.1
CLN3-209ENST00000561689 MSRB1Q9NZV6 116 aa15.66■□□□□ 0.1
CLN3-209ENST00000561689 CMC4P56277 68 aaPredicted RBP15.66■□□□□ 0.1
CLN3-209ENST00000561689 LINC00310P59036 64 aa15.66■□□□□ 0.1
CLN3-209ENST00000561689 C19orf73Q9NVV2 129 aa15.66■□□□□ 0.1
CLN3-209ENST00000561689 A0A1B0GW15 77 aa15.65■□□□□ 0.1
CLN3-209ENST00000561689 SPRY2O43597 315 aa15.65■□□□□ 0.1
CLN3-209ENST00000561689 S100A4P26447 101 aaKnown RBP15.65■□□□□ 0.1
CLN3-209ENST00000561689 ASIPP42127 132 aa15.65■□□□□ 0.1
CLN3-209ENST00000561689 INSL3P51460 131 aa15.65■□□□□ 0.1
CLN3-209ENST00000561689 OR10AG1Q8NH19 301 aa15.65■□□□□ 0.1
CLN3-209ENST00000561689 LINC00587B1AMM8 73 aa15.64■□□□□ 0.09
CLN3-209ENST00000561689 RBMY1A1P0DJD3 496 aaKnown RBP15.64■□□□□ 0.09
CLN3-209ENST00000561689 RBMY1CP0DJD4 496 aa15.64■□□□□ 0.09
CLN3-209ENST00000561689 RBMY1FQ15415 496 aaKnown RBP15.64■□□□□ 0.09
CLN3-209ENST00000561689 CNFNQ9BYD5 112 aa15.64■□□□□ 0.09
CLN3-209ENST00000561689 OR5AL1P0C617 328 aa15.63■□□□□ 0.09
CLN3-209ENST00000561689 TRPT1Q86TN4 253 aaKnown RBP15.63■□□□□ 0.09
CLN3-209ENST00000561689 SNAI2O43623 268 aa15.62■□□□□ 0.09
CLN3-209ENST00000561689 TMEM18Q96B42 140 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms