RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-212	ENST00000524922	TMEM235	A6NFC5	223 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ZNF705G	A8MUZ8	300 aa	Predicted RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922		G3V2T6	193 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922		H3BRN7	92 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	GABARAP	H6UMI1	98 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922		J3QLW9	94 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922		J3QRK9	145 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922		M0R2P5	195 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	WRB	O00258	174 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	GPR31	O00270	319 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	GNGT2	O14610	69 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	PDCD5	O14737	125 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	CTDSPL	O15194	276 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	MRPS12	O15235	138 aa	Known RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ATP8B1	O43520	1251 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	FKBP6	O75344	327 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	MPDU1	O75352	247 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	PGLYRP1	O75594	196 aa	Predicted RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	GABARAP	O95166	117 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	IFNA7	P01567	189 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	APELA	P0DMC3	54 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	IGKV1-13	P0DP09	117 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	SLC25A6	P12236	298 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	CALB2	P22676	271 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	UCP1	P25874	307 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	INPP1	P49441	399 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	PPT1	P50897	306 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	CAV2	P51636	162 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	TAS2R46	P59540	309 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	MT1H	P80294	61 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	FLOT2	Q14254	428 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	SURF2	Q15527	256 aa	Predicted RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	SPINK13	Q1W4C9	94 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	KRTAP19-2	Q3LHN2	52 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	FAM229B	Q4G0N7	80 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	DNAL1	Q4LDG9	190 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	AADACL3	Q5VUY0	350 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	CFAP161	Q6P656	301 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	KCNIP4	Q6PIL6	250 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ZNF818P	Q6ZRF7	136 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922		Q6ZRG5	221 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	C19orf35	Q6ZS72	473 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922		Q6ZTI0	123 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	KRTAP13-1	Q8IUC0	172 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	BAP18	Q8IXM2	172 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	C10orf67	Q8IYJ2	551 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	VKORC1L1	Q8N0U8	176 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	FAM19A2	Q8N3H0	131 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	SLC35G3	Q8N808	338 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	CYB561D1	Q8N8Q1	229 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	OR13C8	Q8NGS7	320 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	OR51H1	Q8NH63	302 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	OR1S1	Q8NH92	325 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ZNF431	Q8TF32	576 aa	Predicted RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	FAM3D	Q96BQ1	224 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	YIPF6	Q96EC8	236 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	SFRP2	Q96HF1	295 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	LINC00477	Q96M19	166 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	CIB3	Q96Q77	187 aa	Predicted RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	MGLL	Q99685	303 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	SHANK2-AS3	Q9BTD1	123 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	PDCD10	Q9BUL8	212 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	GGACT	Q9BVM4	153 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	BANF2	Q9H503	90 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	RPP21	Q9H633	154 aa	Known RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	AUNIP	Q9H7T9	357 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ENY2	Q9NPA8	101 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ACOT13	Q9NPJ3	140 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	MED4	Q9NPJ6	270 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	TAS2R8	Q9NYW2	309 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	RRP15	Q9Y3B9	282 aa	Known RBP	0.83	□□□□□ -2.28
CD44-212	ENST00000524922	ORC6	Q9Y5N6	252 aa		0.83	□□□□□ -2.28
CD44-212	ENST00000524922	IGKV3-7	A0A075B6H7	116 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	IGKV1D-37	A0A075B6S9	117 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	IGHV3OR16-13	A0A075B7E8	117 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	TRGV1	A0A0A0MS02	117 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	IGHV3-74	A0A0B4J1X5	117 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	TRGV4	A0A0C4DH28	118 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	SERTM2	A0A1B0GWG4	89 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	PGP	A6NDG6	321 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	IFITM5	A6NNB3	132 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922		A8MWV9	139 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922		M0R2Z0	102 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	SLC17A3	O00476	420 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	HMGB3	O15347	200 aa	Known RBP	0.82	□□□□□ -2.28
CD44-212	ENST00000524922	CCL25	O15444	150 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	CDS2	O95674	445 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	CRP	P02741	224 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	OR4E1	P0C645	316 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	RPS10	P46783	165 aa	Known RBP	0.82	□□□□□ -2.28
CD44-212	ENST00000524922	RND2	P52198	227 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	CLDN12	P56749	244 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	HAMP	P81172	84 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	ZNF266	Q14584	549 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	SPHAR	Q15513	63 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	TMEM183B	Q1AE95	376 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	KRTAP20-1	Q3LI63	56 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	KRTAP19-6	Q3LI70	58 aa		0.82	□□□□□ -2.28
CD44-212	ENST00000524922	OR10J3	Q5JRS4	329 aa		0.82	□□□□□ -2.28

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