RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NCKAP5O14513 1909 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 IGLV2-8P01709 118 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 SLC25A16P16260 332 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 PDE6HQ13956 83 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 ZNF503Q96F45 646 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 PAX1P15863 534 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 FAM110DQ8TAY7 271 aaPredicted RBP12.83□□□□□ -0.35
CCDC88B-209ENST00000494080 PRR25Q96S07 402 aa12.83□□□□□ -0.35
CCDC88B-209ENST00000494080 OVOL1O14753 267 aa12.83□□□□□ -0.36
CCDC88B-209ENST00000494080 NAV3Q8IVL0 2385 aa12.83□□□□□ -0.36
CCDC88B-209ENST00000494080 NACAE9PAV3 2078 aa12.83□□□□□ -0.36
CCDC88B-209ENST00000494080 Q8N8P6 123 aa12.83□□□□□ -0.36
CCDC88B-209ENST00000494080 TRAV26-2A0A0B4J265 109 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 C9orf139Q6ZV77 190 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 PIP4P2Q8N4L2 257 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 MYMXA0A1B0GTQ4 84 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 BOD1L2Q8IYS8 172 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 IGLL5B9A064 214 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 PEMTQ9UBM1 199 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 TNFRSF18Q9Y5U5 241 aa12.82□□□□□ -0.36
CCDC88B-209ENST00000494080 E7EUB6 86 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 KLF12Q9Y4X4 402 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 EML5Q05BV3 1969 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 DNAL4O96015 105 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 SMIM20Q8N5G0 67 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 DSCAML1Q8TD84 2053 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 C2orf82Q6UX34 121 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 LINC01356Q8N9X3 169 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 USMG5Q96IX5 58 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 PRADC1Q9BSG0 188 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 HIVEP2P31629 2446 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 TMEM14CQ9P0S9 112 aa12.81□□□□□ -0.36
CCDC88B-209ENST00000494080 FOXI2Q6ZQN5 318 aa12.8□□□□□ -0.36
CCDC88B-209ENST00000494080 ZFYVE26Q68DK2 2539 aa12.8□□□□□ -0.36
CCDC88B-209ENST00000494080 A0A0U1RRA0 63 aa12.8□□□□□ -0.36
CCDC88B-209ENST00000494080 NPC2P61916 151 aa12.8□□□□□ -0.36
CCDC88B-209ENST00000494080 C2orf66Q6UXQ4 117 aa12.8□□□□□ -0.36
CCDC88B-209ENST00000494080 ZNF491Q8N8L2 437 aa12.8□□□□□ -0.36
CCDC88B-209ENST00000494080 SYNJ2BPP57105 145 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 DTX2Q86UW9 622 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 C8orf31Q8N9H6 132 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 DPH3P1Q9H4G8 78 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 IGKV3D-20A0A0C4DH25 116 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 TAL2Q16559 108 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 F8VRH5 84 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 TRBV20-1A0A075B6N2 111 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 FAM223BA6NKX1 122 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 GATA1P15976 413 aaPredicted RBP12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 GAGE5Q13069 117 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 GAGE6Q13070 117 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 FAM223AQ8IWN6 122 aa12.79□□□□□ -0.36
CCDC88B-209ENST00000494080 TOMM7Q9P0U1 55 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 CHD9Q3L8U1 2897 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 ARHGAP32A7KAX9 2087 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 HTN3P15516 51 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 A0A1B0GXF2 115 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 DAZ1Q9NQZ3 744 aaKnown RBP12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 PRB1P04280 392 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 HLA-DRB4P13762 266 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 GP9P14770 177 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 HLA-DRB4X5D2U9 266 aa12.78□□□□□ -0.36
CCDC88B-209ENST00000494080 DUSP14O95147 198 aaKnown RBP12.77□□□□□ -0.36
CCDC88B-209ENST00000494080 LINC00322Q6ZN03 302 aaPredicted RBP12.77□□□□□ -0.36
CCDC88B-209ENST00000494080 EGR2P11161 476 aaPredicted RBP12.77□□□□□ -0.37
CCDC88B-209ENST00000494080 ATXN8Q156A1 80 aa12.77□□□□□ -0.37
CCDC88B-209ENST00000494080 H3BRN7 92 aa12.77□□□□□ -0.37
CCDC88B-209ENST00000494080 M0R2P5 195 aa12.77□□□□□ -0.37
CCDC88B-209ENST00000494080 IL17RELQ6ZVW7 336 aa12.77□□□□□ -0.37
CCDC88B-209ENST00000494080 OR11H6Q8NGC7 330 aa12.77□□□□□ -0.37
CCDC88B-209ENST00000494080 HOXB4P17483 251 aaPredicted RBP12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 MRPL36Q9P0J6 103 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 IGHV4-61A0A0C4DH41 118 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 LOXL1Q08397 574 aaPredicted RBP12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 STHQ8IWL8 128 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 OR13C6PQ8NH95 151 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 MSRB1Q9NZV6 116 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 IGLV1-47P01700 117 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 CR1LQ2VPA4 569 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 TANC2Q9HCD6 1990 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 CGB3P0DN86 165 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 CGB7P0DN87 165 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 HLA-DMBP28068 263 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 LINC00477Q96M19 166 aa12.76□□□□□ -0.37
CCDC88B-209ENST00000494080 IGKV1-17P01599 117 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 Q8N976 141 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 KIAA1549Q9HCM3 1950 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 C1QTNF4Q9BXJ3 329 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 TRGV2A0A075B6R0 118 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 C1orf229Q6ZS94 237 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 COPS9Q8WXC6 57 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 NRGNQ92686 78 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 MBD6Q96DN6 1003 aa12.75□□□□□ -0.37
CCDC88B-209ENST00000494080 DSCAMO60469 2012 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 GAGE12JA6NER3 117 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 GAGE7O76087 117 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 GAGE12FP0CL80 117 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 GAGE12GP0CL81 117 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 GAGE12IP0CL82 117 aa12.74□□□□□ -0.37
CCDC88B-209ENST00000494080 CD28P10747 220 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms