RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 Q6ZN92 141 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 SPATA12Q7Z6I5 190 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 CMYA5Q8N3K9 4069 aa11.29□□□□□ -0.6
USP4-203ENST00000415188 PRAC2D3DTV9 90 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 D6R8Y8 96 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 TCAPO15273 167 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 ORM1P02763 201 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 PPIFP30405 207 aaKnown RBP11.28□□□□□ -0.6
USP4-203ENST00000415188 MRPL51Q4U2R6 128 aaKnown RBP11.28□□□□□ -0.6
USP4-203ENST00000415188 NPFFR1Q9GZQ6 430 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 AGPAT4-IT1Q9H0P7 198 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 MEGF8Q7Z7M0 2845 aa11.28□□□□□ -0.6
USP4-203ENST00000415188 HSBP1L1C9JCN9 74 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 IGHV4-59P01825 116 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 CSN3P07498 182 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 ERCC8Q13216 396 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 TWIST1Q15672 202 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 AMN1Q8IY45 258 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 ATOH7Q8N100 152 aa11.27□□□□□ -0.6
USP4-203ENST00000415188 A0A0G2JLM5 398 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 H3BUX3 64 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 PRB4P10163 310 aaPredicted RBP11.26□□□□□ -0.61
USP4-203ENST00000415188 COL5A1-AS1Q5SY13 56 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 LINC01545Q5VT33 79 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 TMEM86BQ8N661 226 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 RNF182Q8N6D2 247 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 C16orf92Q96LL3 132 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 MS4A6AQ9H2W1 248 aa11.26□□□□□ -0.61
USP4-203ENST00000415188 IGHV3-66A0A0C4DH42 116 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 OVOL1O14753 267 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 IGLL1P15814 213 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 TSPOP30536 169 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 LINC00173Q6ZV60 143 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 WFDC12Q8WWY7 111 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 SIGLEC8Q9NYZ4 499 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 ZNF207O43670 478 aaKnown RBP11.25□□□□□ -0.61
USP4-203ENST00000415188 NDUFA7O95182 113 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 CKS2P33552 79 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 ZNF575Q86XF7 245 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 LINC00477Q96M19 166 aa11.25□□□□□ -0.61
USP4-203ENST00000415188 LINC01546A6NGU7 62 aa11.24□□□□□ -0.61
USP4-203ENST00000415188 IGLV1-40P01703 118 aa11.24□□□□□ -0.61
USP4-203ENST00000415188 IFI27P40305 119 aaPredicted RBP11.24□□□□□ -0.61
USP4-203ENST00000415188 CACNG7P62955 275 aa11.24□□□□□ -0.61
USP4-203ENST00000415188 LY6EQ16553 131 aa11.24□□□□□ -0.61
USP4-203ENST00000415188 SAMD13Q5VXD3 122 aa11.24□□□□□ -0.61
USP4-203ENST00000415188 IGHV3OR16-13A0A075B7E8 117 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 IGHV3-49A0A0A0MS15 119 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 IGHV3-74A0A0B4J1X5 117 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 TRBV7-9A0A0J9YWB2 115 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 HBDP02042 147 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 KRTAP10-3P60369 221 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 MAJINQ3KP22 176 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 DPF1Q92782 380 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 MAP1LC3AQ9H492 121 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 LINC00527Q9UJ94 153 aa11.23□□□□□ -0.61
USP4-203ENST00000415188 IGHV4-4A0A075B6R2 117 aa11.22□□□□□ -0.61
USP4-203ENST00000415188 SOCS3O14543 225 aa11.22□□□□□ -0.61
USP4-203ENST00000415188 CFHR3Q02985 330 aa11.22□□□□□ -0.61
USP4-203ENST00000415188 SMIM15Q7Z3B0 74 aa11.22□□□□□ -0.61
USP4-203ENST00000415188 RNF185Q96GF1 192 aa11.22□□□□□ -0.61
USP4-203ENST00000415188 IGKV3D-20A0A0C4DH25 116 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 SNAI2O43623 268 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 PF4V1P10720 104 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 ZNF738Q8NE65 137 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 OR4X2Q8NGF9 303 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 OR10J6PQ8NGY7 276 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 LINC01006Q8NI28 216 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 PMCHL2Q9BQD1 86 aa11.21□□□□□ -0.61
USP4-203ENST00000415188 NXT2Q9NPJ8 142 aaKnown RBP11.21□□□□□ -0.61
USP4-203ENST00000415188 A0A096LNJ9 63 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 K7EMT4 169 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 NPYP01303 97 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 GAGE1Q13065 139 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 LGALS9BQ3B8N2 356 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 LGALS9CQ6DKI2 356 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 UNQ9165/PRO28630Q6UXU0 137 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 CITED1Q99966 193 aa11.2□□□□□ -0.62
USP4-203ENST00000415188 IGHV7-4-1A0A0J9YVY3 117 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 LOC389332A0A1B0GUA5 103 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 TRBV12-3P01733 135 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 MED14OSP0DP75 135 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 BATFQ16520 125 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 SLC25A34Q6PIV7 304 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 Q6ZSV7 163 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 DEFB125Q8N687 156 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 C11orf21Q9P2W6 132 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 MUC21A0A0G2JKD1 596 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 MUC21A0A140T8X8 626 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 PRSS47A8MTI9 375 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 BLCAPP62952 87 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 PSMG4Q5JS54 123 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 MUC21Q5SSG8 566 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 GPHB5Q86YW7 130 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 C20orf173Q96LM9 149 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 SCRT2Q9NQ03 307 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 VPREB3Q9UKI3 123 aa11.19□□□□□ -0.62
USP4-203ENST00000415188 WNK1Q9H4A3 2382 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 TRAV21A0A0B4J279 112 aa11.18□□□□□ -0.62
USP4-203ENST00000415188 hDV102S1A0JD36 115 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms