RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 GATA1P15976 413 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 GAGE13Q4V321 117 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 MTURNQ8N3F0 131 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 TMEM141Q96I45 108 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 ODF3Q96PU9 254 aa4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 CITED2Q99967 270 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-203ENST00000412148 TRBV6-5A0A0K0K1A5 114 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 ATP6V0E1O15342 81 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 SPANXN1Q5VSR9 72 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 CFAP126Q5VTH2 177 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 C5orf56Q8N8D9 126 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 BAALCQ8WXS3 180 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 HIST1H4GQ99525 98 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 TIMM17AQ99595 171 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 KIF25-AS1Q9Y6Z4 181 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 S4R3C0 116 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 AGRNO00468 2067 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 TRBV20-1A0A075B6N2 111 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 HOXA3O43365 443 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 IGF1P05019 195 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 CD7P09564 240 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 NBL1P41271 181 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 HIST2H2BCQ6DN03 193 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 HIST2H2BDQ6DRA6 164 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 DLX4Q92988 240 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 SCGB3A1Q96QR1 104 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 C1QTNF4Q9BXJ3 329 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 DSPP15924 2871 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 SVILO95425 2214 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 C11orf86A6NJI1 115 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 K7ERJ3 54 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 AZU1P20160 251 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 MALP21145 153 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 ASIPP42127 132 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 ATP5G2Q06055 141 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 GPHB5Q86YW7 130 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 RNF182Q8N6D2 247 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 USMG5Q96IX5 58 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 SPAG8Q99932 426 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 EDA2RQ9HAV5 297 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 RAXQ9Y2V3 346 aa4.35□□□□□ -1.71
CCDC88A-203ENST00000412148 A0A0J9YX75 114 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 A0A1B0GV72 72 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 IGIPA6NJ69 53 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 POLR2KP53803 58 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 RPL24P83731 157 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 PRB3Q04118 309 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 WFDC2Q14508 124 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 IGFL4Q6B9Z1 124 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 LINC01560Q8TB33 94 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 NAA38Q9BRA0 125 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 TTTY13Q9BZ97 58 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 OTOGLQ3ZCN5 2332 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 ARHGAP32A7KAX9 2087 aa4.34□□□□□ -1.71
CCDC88A-203ENST00000412148 PRSS29PA6NIE9 313 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 KLLNB2CW77 178 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV1-69P01742 117 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 IGHV3-23P01764 117 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 LINC00315P59091 139 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 HERVK_113P61574 105 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 PRR9Q5T870 116 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 C2orf66Q6UXQ4 117 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 CLEC19AQ6UXS0 136 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 NFE4Q86UQ8 179 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 OR10J6PQ8NGY7 276 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 MOB4Q9Y3A3 225 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 DMDP11532 3685 aa4.34□□□□□ -1.72
CCDC88A-203ENST00000412148 NBEAQ8NFP9 2946 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 GPR179Q6PRD1 2367 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 IGLV4-69A0A075B6H9 119 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 H3BVH4 76 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 K7EMT4 169 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 LGALS9O00182 355 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 CRYGDP07320 174 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 ZFP36P26651 326 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 EFNA4P52798 201 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 FOXI1Q12951 378 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 PRADC1Q9BSG0 188 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 CYSLTR1Q9Y271 337 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 TSSC4Q9Y5U2 329 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 TRBV27A0A0K0K1C4 114 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 RNASE3P12724 160 aaKnown RBP4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 CRYBA4P53673 196 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 ADORA2A-AS1P86434 159 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 PMVKQ15126 192 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 PRR30Q53SZ7 412 aaPredicted RBP4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 SLC25A29Q8N8R3 303 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 C20orf173Q96LM9 149 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 UFC1Q9Y3C8 167 aa4.33□□□□□ -1.72
CCDC88A-203ENST00000412148 TRAV41A0A0B4J266 112 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 A0A0J9YY99 117 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 NPFFO15130 113 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 PPIFP30405 207 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 SAA4P35542 130 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 TCF15Q12870 199 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 RHOHQ15669 191 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 NSUN5P1Q3KNT7 163 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 ZNF876PQ49A33 203 aa4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 SPENQ96T58 3664 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-203ENST00000412148 ZZEF1O43149 2961 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms