RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 A0A096LNJ9 63 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 F5H697 171 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 K7EP13 123 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 PIFOQ8TCI5 191 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 LINC00477Q96M19 166 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 RHPN1-AS1Q9BWJ2 59 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 GTSCR1Q86UQ5 136 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 HBDP02042 147 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 PRORYQ9H606 182 aa10.24□□□□□ -0.77
VPS54-203ENST00000409558 TRAV8-6A0A0B4J262 113 aa10.23□□□□□ -0.77
VPS54-203ENST00000409558 OR4C5Q8NGB2 326 aa10.23□□□□□ -0.77
VPS54-203ENST00000409558 JPT2Q9H910 190 aa10.23□□□□□ -0.77
VPS54-203ENST00000409558 CCL25O15444 150 aa10.23□□□□□ -0.77
VPS54-203ENST00000409558 OR10J6PQ8NGY7 276 aa10.23□□□□□ -0.77
VPS54-203ENST00000409558 BEX4Q9NWD9 120 aaPredicted RBP10.23□□□□□ -0.77
VPS54-203ENST00000409558 PHLDA3Q9Y5J5 127 aa10.23□□□□□ -0.77
VPS54-203ENST00000409558 RNF223E7ERA6 249 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 MSMBP08118 114 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 PET117Q6UWS5 81 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 NPFFR1Q9GZQ6 430 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 FLNAP21333 2647 aaKnown RBP10.22□□□□□ -0.77
VPS54-203ENST00000409558 DEFB136Q30KP8 78 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 Q6AWC8 147 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 HIST2H2BCQ6DN03 193 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 A0A087WWL8 130 aa10.22□□□□□ -0.77
VPS54-203ENST00000409558 TRBV7-1A0A0A6YYK4 115 aa10.21□□□□□ -0.77
VPS54-203ENST00000409558 TRAV12-3A0A0B4J271 114 aa10.21□□□□□ -0.77
VPS54-203ENST00000409558 NIPBLQ6KC79 2804 aaeCLIP10.21□□□□□ -0.77
VPS54-203ENST00000409558 DEFB112Q30KQ8 113 aa10.21□□□□□ -0.77
VPS54-203ENST00000409558 AMMECR1LQ6DCA0 310 aa10.21□□□□□ -0.77
VPS54-203ENST00000409558 RPL39LQ96EH5 51 aaKnown RBP10.21□□□□□ -0.77
VPS54-203ENST00000409558 C10orf105Q8TEF2 133 aa10.21□□□□□ -0.78
VPS54-203ENST00000409558 SLC50A1Q9BRV3 221 aa10.21□□□□□ -0.78
VPS54-203ENST00000409558 PRM2P04554 102 aa10.21□□□□□ -0.78
VPS54-203ENST00000409558 ANXA2RQ3ZCQ2 193 aa10.21□□□□□ -0.78
VPS54-203ENST00000409558 RNF185Q96GF1 192 aa10.2□□□□□ -0.78
VPS54-203ENST00000409558 FASNP49327 2511 aaKnown RBP10.2□□□□□ -0.78
VPS54-203ENST00000409558 ST20Q9HBF5 79 aa10.2□□□□□ -0.78
VPS54-203ENST00000409558 GCSHP23434 173 aa10.2□□□□□ -0.78
VPS54-203ENST00000409558 OR2K2Q8NGT1 345 aa10.2□□□□□ -0.78
VPS54-203ENST00000409558 PSMG4Q5JS54 123 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 IGLC6P0CF74 106 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 SFTPCP11686 197 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 SYNJ2BPP57105 145 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 SPOCK3Q9BQ16 436 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 ZC2HC1BQ5TFG8 222 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 C16orf54Q6UWD8 224 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 AP1S3Q96PC3 154 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 RPS20P60866 119 aaKnown RBP10.19□□□□□ -0.78
VPS54-203ENST00000409558 BVES-AS1Q5T3Y7 98 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 SCRT2Q9NQ03 307 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 KLK9Q9UKQ9 250 aa10.19□□□□□ -0.78
VPS54-203ENST00000409558 HECTD1Q9ULT8 2610 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 RAB9AP51151 201 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 COX11Q9Y6N1 276 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 IGHV3-73A0A0B4J1V6 119 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 S100A7P31151 101 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 KRTAP10-9P60411 292 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 LINC01545Q5VT33 79 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 SFTA2Q6UW10 78 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 ZNF575Q86XF7 245 aa10.18□□□□□ -0.78
VPS54-203ENST00000409558 MRPS16Q9Y3D3 137 aaKnown RBP10.18□□□□□ -0.78
VPS54-203ENST00000409558 SMIM17P0DL12 118 aa10.17□□□□□ -0.78
VPS54-203ENST00000409558 ITPR3Q14573 2671 aa10.17□□□□□ -0.78
VPS54-203ENST00000409558 IGKV2D-26A0A0A0MRZ7 120 aa10.17□□□□□ -0.78
VPS54-203ENST00000409558 CD7P09564 240 aa10.17□□□□□ -0.78
VPS54-203ENST00000409558 ZNF48Q96MX3 618 aaPredicted RBP10.17□□□□□ -0.78
VPS54-203ENST00000409558 A0A1B0GW15 77 aa10.16□□□□□ -0.78
VPS54-203ENST00000409558 H3BUT2 72 aa10.16□□□□□ -0.78
VPS54-203ENST00000409558 ZNF493Q6ZR52 646 aa10.16□□□□□ -0.78
VPS54-203ENST00000409558 TMEM8BA6NDV4 472 aa10.16□□□□□ -0.78
VPS54-203ENST00000409558 K7ERJ3 54 aa10.15□□□□□ -0.78
VPS54-203ENST00000409558 SPINK13Q1W4C9 94 aa10.15□□□□□ -0.78
VPS54-203ENST00000409558 GPHB5Q86YW7 130 aa10.15□□□□□ -0.78
VPS54-203ENST00000409558 MRPL35Q9NZE8 188 aaKnown RBP10.15□□□□□ -0.78
VPS54-203ENST00000409558 ZNF256Q9Y2P7 627 aaPredicted RBP10.15□□□□□ -0.78
VPS54-203ENST00000409558 A0A1W2PRX2 142 aa10.15□□□□□ -0.78
VPS54-203ENST00000409558 MYOZ3Q8TDC0 251 aa10.15□□□□□ -0.78
VPS54-203ENST00000409558 C18orf65Q6ZTR6 163 aa10.15□□□□□ -0.79
VPS54-203ENST00000409558 TRBV6-1A0A0K0K1D8 114 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 B4DSR2 109 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 CRXO43186 299 aaPredicted RBP10.14□□□□□ -0.79
VPS54-203ENST00000409558 BBC3Q96PG8 261 aaPredicted RBP10.14□□□□□ -0.79
VPS54-203ENST00000409558 IGHV7-4-1A0A0J9YVY3 117 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 ASIPP42127 132 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 LINC01559Q495D7 138 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 TMEM97Q5BJF2 176 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 C12orf54Q6X4T0 127 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 COX8AP10176 69 aa10.14□□□□□ -0.79
VPS54-203ENST00000409558 RNASE8Q8TDE3 154 aaKnown RBP10.14□□□□□ -0.79
VPS54-203ENST00000409558 TAX1BP3O14907 124 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 FAM223BA6NKX1 122 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 FAM159AQ6UWV7 190 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 C9orf139Q6ZV77 190 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 FAM223AQ8IWN6 122 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 MTURNQ8N3F0 131 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 DAZ1Q9NQZ3 744 aaKnown RBP10.13□□□□□ -0.79
VPS54-203ENST00000409558 C2orf91Q6ZV80 131 aa10.13□□□□□ -0.79
VPS54-203ENST00000409558 CD5LO43866 347 aa10.12□□□□□ -0.79
VPS54-203ENST00000409558 SCGB2A2Q13296 93 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms