RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HIVEP1P15822 2718 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 ARMS2P0C7Q2 107 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 CD33P20138 364 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 BTF3P20290 206 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 NDUFA11Q86Y39 141 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 FAM19A2Q8N3H0 131 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 DCANP1Q8TF63 244 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 PRAC2D3DTV9 90 aa13.71□□□□□ -0.22
CCDC88C-203ENST00000389856 LINC00614P0C842 121 aa13.71□□□□□ -0.22
CCDC88C-203ENST00000389856 CTRLP40313 264 aa13.71□□□□□ -0.22
CCDC88C-203ENST00000389856 DUX3Q96PT4 197 aa13.71□□□□□ -0.22
CCDC88C-203ENST00000389856 FABP5P3A8MUU1 101 aa13.7□□□□□ -0.22
CCDC88C-203ENST00000389856 M0R143 59 aa13.7□□□□□ -0.22
CCDC88C-203ENST00000389856 ASCL2Q99929 193 aa13.7□□□□□ -0.22
CCDC88C-203ENST00000389856 SIGLEC8Q9NYZ4 499 aa13.7□□□□□ -0.22
CCDC88C-203ENST00000389856 TRAV25A0A0B4J276 109 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 TRBV7-9A0A0J9YWB2 115 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 K7EQG2 157 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 CSN3P07498 182 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 EDN2P20800 178 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 WFDC3Q8IUB2 231 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 URB1-AS1Q96HZ7 61 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 C20orf173Q96LM9 149 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 AGPAT4-IT1Q9H0P7 198 aa13.69□□□□□ -0.22
CCDC88C-203ENST00000389856 ERCC8Q13216 396 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 OR8A1Q8NGG7 326 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 Q8TAT8 98 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 ZMAT5Q9UDW3 170 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 PAM16Q9Y3D7 125 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 CRXO43186 299 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 HIST1H1AQ02539 215 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 LYZL1Q6UWQ5 148 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 TMEM70Q9BUB7 260 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 U3KQK5 164 aa13.68□□□□□ -0.22
CCDC88C-203ENST00000389856 IGLC6P0CF74 106 aa13.67□□□□□ -0.22
CCDC88C-203ENST00000389856 TFPI2P48307 235 aa13.67□□□□□ -0.22
CCDC88C-203ENST00000389856 LINC01559Q495D7 138 aa13.67□□□□□ -0.22
CCDC88C-203ENST00000389856 EBLN2Q6P2I7 272 aa13.67□□□□□ -0.22
CCDC88C-203ENST00000389856 FER1L6-AS1Q8NA97 138 aa13.67□□□□□ -0.22
CCDC88C-203ENST00000389856 OR4C46A6NHA9 309 aa13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 NSUN5P1Q3KNT7 163 aa13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 FAM104BQ5XKR9 115 aa13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 CNFNQ9BYD5 112 aa13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 HSPB8Q9UJY1 196 aa13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 FN1P02751 2386 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 TEP1Q99973 2627 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-203ENST00000389856 IGHV1-24A0A0C4DH33 117 aa13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 DUSP14O95147 198 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 TDRG1Q3Y452 100 aa13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 SPATA45Q537H7 98 aa13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 PSMG4Q5JS54 123 aa13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 ADAMTSL5Q6ZMM2 481 aa13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 SPAG8Q99932 426 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 UQCR10Q9UDW1 63 aa13.65□□□□□ -0.22
CCDC88C-203ENST00000389856 LEPROTL1O95214 131 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 ZNF688P0C7X2 276 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 DEFB114Q30KQ6 69 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 ZNF705AQ6ZN79 300 aaPredicted RBP13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 F8P00451 2351 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 TRAV9-2A0A087WT02 112 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 PET117Q6UWS5 81 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 TPPP3Q9BW30 176 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 AP5S1Q9NUS5 200 aa13.64□□□□□ -0.23
CCDC88C-203ENST00000389856 PF4P02776 101 aa13.63□□□□□ -0.23
CCDC88C-203ENST00000389856 PRB4P10163 310 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-203ENST00000389856 FA2HQ7L5A8 372 aa13.63□□□□□ -0.23
CCDC88C-203ENST00000389856 ORMDL3Q8N138 153 aa13.63□□□□□ -0.23
CCDC88C-203ENST00000389856 ODF3Q96PU9 254 aa13.63□□□□□ -0.23
CCDC88C-203ENST00000389856 TMEM191AQ9H0A3 160 aa13.63□□□□□ -0.23
CCDC88C-203ENST00000389856 ADARB2-AS1A8MUL3 147 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 PPBPP02775 128 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 LEPP41159 167 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 ZNF80P51504 273 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 CMC4P56277 68 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 FOXI2Q6ZQN5 318 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 TMEM61Q8N0U2 210 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 OR2K2Q8NGT1 345 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 SNHG12Q9BXW3 62 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 MAP1LC3CQ9BXW4 147 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 LAMTOR2Q9Y2Q5 125 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 SELENOKQ9Y6D0 94 aa13.62□□□□□ -0.23
CCDC88C-203ENST00000389856 ORM1P02763 201 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 IGLC3P0DOY3 106 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 SSTP61278 116 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 NF1P21359 2839 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 TMSB15BA0A087X1C1 80 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 SYS1-DBNDD2H3BUS1 97 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 TSPOP30536 169 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 HIST2H2BDQ6DRA6 164 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 OR10AG1Q8NH19 301 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 PRSS3P2Q8NHM4 247 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 PRELID3AQ96N28 172 aa13.61□□□□□ -0.23
CCDC88C-203ENST00000389856 TRAV21A0A0B4J279 112 aa13.6□□□□□ -0.23
CCDC88C-203ENST00000389856 A0A0J9YX75 114 aa13.6□□□□□ -0.23
CCDC88C-203ENST00000389856 EREGO14944 169 aa13.6□□□□□ -0.23
CCDC88C-203ENST00000389856 CD300EQ496F6 205 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-203ENST00000389856 SAP30O75446 220 aa13.59□□□□□ -0.23
CCDC88C-203ENST00000389856 SPATA12Q7Z6I5 190 aa13.59□□□□□ -0.23
CCDC88C-203ENST00000389856 FAM19A4Q96LR4 140 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms