RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CCL25O15444 150 aa15.75■□□□□ 0.11
CCDC88B-203ENST00000359902 LEPP41159 167 aa15.75■□□□□ 0.11
CCDC88B-203ENST00000359902 MPV17L2Q567V2 206 aa15.75■□□□□ 0.11
CCDC88B-203ENST00000359902 OR2K2Q8NGT1 345 aa15.75■□□□□ 0.11
CCDC88B-203ENST00000359902 SELENOKQ9Y6D0 94 aa15.75■□□□□ 0.11
CCDC88B-203ENST00000359902 TRAV21A0A0B4J279 112 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 COX8AP10176 69 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 PSMB8P28062 276 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 FCER1GP30273 86 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 UFC1Q9Y3C8 167 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 IGLV2-18A0A075B6J9 118 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 EDN2P20800 178 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 UBE2V1Q13404 147 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 WFDC3Q8IUB2 231 aa15.74■□□□□ 0.11
CCDC88B-203ENST00000359902 CSMD2Q7Z408 3487 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 K7EMT4 169 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 Q8N8P6 123 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 NRACQ8N912 160 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 DPF1Q92782 380 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 TRAV26-2A0A0B4J265 109 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 MAPK1IP1LQ8NDC0 245 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 COX11Q9Y6N1 276 aa15.73■□□□□ 0.11
CCDC88B-203ENST00000359902 PRSS47A8MTI9 375 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 NUDT3O95989 172 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 SRD5A1P18405 259 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 RBX1P62877 108 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 RNASE8Q8TDE3 154 aaKnown RBP15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 J3QLI3 93 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 TGFAP01135 160 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 C10orf99Q6UWK7 81 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 APRG1Q8IVJ8 170 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 C18orf15Q96N68 181 aa15.72■□□□□ 0.11
CCDC88B-203ENST00000359902 RNASE4P34096 147 aaKnown RBP15.71■□□□□ 0.11
CCDC88B-203ENST00000359902 DEFB125Q8N687 156 aa15.71■□□□□ 0.11
CCDC88B-203ENST00000359902 COTL1Q14019 142 aa15.71■□□□□ 0.1
CCDC88B-203ENST00000359902 KIR3DS1Q14943 382 aa15.71■□□□□ 0.1
CCDC88B-203ENST00000359902 Q6ZVH6 145 aa15.71■□□□□ 0.1
CCDC88B-203ENST00000359902 BBC3Q96PG8 261 aaPredicted RBP15.71■□□□□ 0.1
CCDC88B-203ENST00000359902 K7EP13 123 aa15.7■□□□□ 0.1
CCDC88B-203ENST00000359902 COX6B1P14854 86 aa15.7■□□□□ 0.1
CCDC88B-203ENST00000359902 ANXA2RQ3ZCQ2 193 aa15.7■□□□□ 0.1
CCDC88B-203ENST00000359902 BVES-AS1Q5T3Y7 98 aa15.7■□□□□ 0.1
CCDC88B-203ENST00000359902 FBN2P35556 2912 aa15.7■□□□□ 0.1
CCDC88B-203ENST00000359902 TRBV7-9A0A0J9YWB2 115 aa15.69■□□□□ 0.1
CCDC88B-203ENST00000359902 OR1N2Q8NGR9 330 aa15.69■□□□□ 0.1
CCDC88B-203ENST00000359902 SPRY2O43597 315 aa15.69■□□□□ 0.1
CCDC88B-203ENST00000359902 SRSF1Q07955 248 aaKnown RBP eCLIP15.69■□□□□ 0.11e-6■■■■□ 21.7
CCDC88B-203ENST00000359902 C2orf91Q6ZV80 131 aa15.69■□□□□ 0.1
CCDC88B-203ENST00000359902 TMEM158Q8WZ71 300 aa15.69■□□□□ 0.1
CCDC88B-203ENST00000359902 DKK2Q9UBU2 259 aa15.69■□□□□ 0.1
CCDC88B-203ENST00000359902 FGF6P10767 208 aa15.68■□□□□ 0.1
CCDC88B-203ENST00000359902 USP24Q9UPU5 2620 aa15.68■□□□□ 0.1
CCDC88B-203ENST00000359902 ASIPP42127 132 aa15.68■□□□□ 0.1
CCDC88B-203ENST00000359902 CDKN1BP46527 198 aa15.68■□□□□ 0.1
CCDC88B-203ENST00000359902 C12orf54Q6X4T0 127 aa15.68■□□□□ 0.1
CCDC88B-203ENST00000359902 DCANP1Q8TF63 244 aa15.68■□□□□ 0.1
CCDC88B-203ENST00000359902 TMEM89A2RUT3 159 aa15.67■□□□□ 0.1
CCDC88B-203ENST00000359902 M0R381 172 aa15.67■□□□□ 0.1
CCDC88B-203ENST00000359902 S100A4P26447 101 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-203ENST00000359902 MRAP2Q96G30 205 aa15.67■□□□□ 0.1
CCDC88B-203ENST00000359902 USP9YO00507 2555 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-203ENST00000359902 ANKRD17O75179 2603 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 A1L4Q6 167 aa15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 GNRH2O43555 120 aa15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 CD5LO43866 347 aa15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 ZFYVE26Q68DK2 2539 aa15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 ZNF462Q96JM2 2506 aa15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 ID1P41134 155 aa15.66■□□□□ 0.1
CCDC88B-203ENST00000359902 RNF223E7ERA6 249 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 MED14OSP0DP75 135 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 LAGE3Q14657 143 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 ODF1Q14990 250 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 OR4C5Q8NGB2 326 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 PHLDA3Q9Y5J5 127 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 SMIM17P0DL12 118 aa15.65■□□□□ 0.1
CCDC88B-203ENST00000359902 PRSS1P07477 247 aa15.64■□□□□ 0.09
CCDC88B-203ENST00000359902 RNASE3P12724 160 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-203ENST00000359902 TCTAP57738 103 aa15.64■□□□□ 0.09
CCDC88B-203ENST00000359902 BOD1L2Q8IYS8 172 aa15.64■□□□□ 0.09
CCDC88B-203ENST00000359902 ZMAT4Q9H898 229 aa15.64■□□□□ 0.09
CCDC88B-203ENST00000359902 FAM208BQ5VWN6 2430 aa15.64■□□□□ 0.09
CCDC88B-203ENST00000359902 POLQO75417 2590 aa15.63■□□□□ 0.09
CCDC88B-203ENST00000359902 KLLNB2CW77 178 aa15.63■□□□□ 0.09
CCDC88B-203ENST00000359902 FSHBP01225 129 aa15.63■□□□□ 0.09
CCDC88B-203ENST00000359902 SAMD13Q5VXD3 122 aa15.63■□□□□ 0.09
CCDC88B-203ENST00000359902 VPREB3Q9UKI3 123 aa15.63■□□□□ 0.09
CCDC88B-203ENST00000359902 C14orf178Q8N769 122 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-203ENST00000359902 ZANQ9Y493 2812 aa15.62■□□□□ 0.09
CCDC88B-203ENST00000359902 ZNF843Q8N446 348 aa15.62■□□□□ 0.09
CCDC88B-203ENST00000359902 DPH3P1Q9H4G8 78 aa15.62■□□□□ 0.09
CCDC88B-203ENST00000359902 IGHV4-31P0DP07 118 aa15.62■□□□□ 0.09
CCDC88B-203ENST00000359902 KRTAP10-9P60411 292 aa15.62■□□□□ 0.09
CCDC88B-203ENST00000359902 Q6YL49 198 aa15.61■□□□□ 0.09
CCDC88B-203ENST00000359902 RASL10AQ92737 203 aa15.61■□□□□ 0.09
CCDC88B-203ENST00000359902 HHLA3Q9XRX5 114 aa15.61■□□□□ 0.09
CCDC88B-203ENST00000359902 TAX1BP3O14907 124 aa15.61■□□□□ 0.09
CCDC88B-203ENST00000359902 ATP5LO75964 103 aa15.61■□□□□ 0.09
CCDC88B-203ENST00000359902 SMIM2Q9BVW6 85 aa15.61■□□□□ 0.09
CCDC88B-203ENST00000359902 FOXC2Q99958 501 aa15.6■□□□□ 0.09
CCDC88B-203ENST00000359902 WFDC12Q8WWY7 111 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms