RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 LCTP09848 1927 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 K7EQD1 137 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 PROP1O75360 226 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 PPBPP02775 128 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 IGFBPL1Q8WX77 278 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 Q9H8V8 135 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 DMRT1Q9Y5R6 373 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 ZNF503-AS2A6NEH8 195 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 DPPA3Q6W0C5 159 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 Q8TAT8 98 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 CTDSPLO15194 276 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 C17orf77Q96MU5 243 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 LAMTOR3Q9UHA4 124 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 EPDR1Q9UM22 224 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 MMP23AO75900 390 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 SIPA1L1O43166 1804 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 IGKV1-9A0A0C4DH69 117 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 NDUFB4O95168 129 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 ARMS2P0C7Q2 107 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 QRFPP83859 136 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 XAF1Q6GPH4 301 aa6.43□□□□□ -1.38
HMGB1-203ENST00000341423 KRTDAPP60985 99 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 TMEM136Q6ZRR5 245 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 LY6G5BQ8NDX9 201 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 LTBP2Q14767 1821 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 FAM3BP58499 235 aaPredicted RBP6.42□□□□□ -1.38
HMGB1-203ENST00000341423 MRGPRG-AS1Q2M3A8 158 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 SFTA3P0C7M3 94 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 MIR17HGQ75NE6 70 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 ANAPC16Q96DE5 110 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 PLNP26678 52 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 COX6B2Q6YFQ2 88 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 ORAOV1Q8WV07 137 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 SMIM12Q96EX1 92 aa6.42□□□□□ -1.38
HMGB1-203ENST00000341423 TRBV6-6A0A0A6YYG2 114 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 NDUFS5O43920 106 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 NPSP0C0P6 89 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 PYYP10082 97 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 TP53RKQ96S44 253 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 LECT2O14960 151 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 ATP6V0CP27449 155 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 PFN2P35080 140 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 DIAPH2-AS1Q14236 149 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 IGHV3-64A0A075B6Q5 118 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 AVPP01185 164 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 IFITM2Q01629 132 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 MPV17L2Q567V2 206 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 GFI1BQ5VTD9 330 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 SDHCQ99643 169 aaPredicted RBP6.41□□□□□ -1.38
HMGB1-203ENST00000341423 MRPS18AQ9NVS2 196 aaKnown RBP6.41□□□□□ -1.38
HMGB1-203ENST00000341423 NACAE9PAV3 2078 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 HLA-DRB4P13762 266 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 KIR3DS1Q14943 382 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 Q6ZSN1 163 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 ORMDL3Q8N138 153 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 EXOC3-AS1Q8N2X6 119 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 HLA-DRB4X5D2U9 266 aa6.41□□□□□ -1.38
HMGB1-203ENST00000341423 TRAV2A0A0B4J234 112 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 NDUFB1O75438 58 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 FABP2P12104 132 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 ID3Q02535 119 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 DAZ2Q13117 558 aaKnown RBP6.4□□□□□ -1.38
HMGB1-203ENST00000341423 DAZ4Q86SG3 579 aaKnown RBP6.4□□□□□ -1.38
HMGB1-203ENST00000341423 HIGD2AQ9BW72 106 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 DAZ3Q9NR90 486 aaKnown RBP6.4□□□□□ -1.38
HMGB1-203ENST00000341423 RNASE2P10153 161 aaKnown RBP6.4□□□□□ -1.38
HMGB1-203ENST00000341423 ANKRD17O75179 2603 aaKnown RBP6.4□□□□□ -1.38
HMGB1-203ENST00000341423 DOCK4Q8N1I0 1966 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 WI2-2373I1.2A0A1W2PRP0 233 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 PMVKQ15126 192 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 PRR4Q16378 134 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 KLF12Q9Y4X4 402 aa6.4□□□□□ -1.38
HMGB1-203ENST00000341423 BCL2L11O43521 198 aa6.4□□□□□ -1.39
HMGB1-203ENST00000341423 IGKV1-6A0A0C4DH72 117 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 I3L3M4 83 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 IGKV1-27A0A075B6S5 117 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 OR10AG1Q8NH19 301 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 RPP21Q9H633 154 aaKnown RBP6.39□□□□□ -1.39
HMGB1-203ENST00000341423 ELF5Q9UKW6 265 aaPredicted RBP6.39□□□□□ -1.39
HMGB1-203ENST00000341423 KIF26AQ9ULI4 1882 aaPredicted RBP6.39□□□□□ -1.39
HMGB1-203ENST00000341423 LYZL1Q6UWQ5 148 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 SCN8AQ9UQD0 1980 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 DOCK11Q5JSL3 2073 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 GTSF1LQ9H1H1 148 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 PNRC2Q9NPJ4 139 aaKnown RBP6.39□□□□□ -1.39
HMGB1-203ENST00000341423 HBDP02042 147 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 ERASQ7Z444 233 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 GATD1Q8NB37 220 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 CARD19Q96LW7 228 aa6.39□□□□□ -1.39
HMGB1-203ENST00000341423 FAM74A7A6NL05 159 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 SPAG11BQ08648 103 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 SSBP4Q9BWG4 385 aaPredicted RBP6.38□□□□□ -1.39
HMGB1-203ENST00000341423 A0A1W2PRE2 83 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 IGLV1-47P01700 117 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 GNG5P63218 68 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 CITED1Q99966 193 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 FGF23Q9GZV9 251 aaPredicted RBP6.38□□□□□ -1.39
HMGB1-203ENST00000341423 NDUFA4L2Q9NRX3 87 aa6.38□□□□□ -1.39
HMGB1-203ENST00000341423 GREB1LQ9C091 1923 aaPredicted RBP6.38□□□□□ -1.39
HMGB1-203ENST00000341423 OBSL1O75147 1896 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 172 ms