RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SPOCK3Q9BQ16 436 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 KLK9Q9UKQ9 250 aa7.86□□□□□ -1.15
LIMA1-201ENST00000341247 TCF21O43680 179 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 S100A4P26447 101 aaKnown RBP7.85□□□□□ -1.15
LIMA1-201ENST00000341247 MPV17L2Q567V2 206 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 C9orf139Q6ZV77 190 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 U3KQK5 164 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 PRRC2AP48634 2157 aaKnown RBP7.85□□□□□ -1.15
LIMA1-201ENST00000341247 COX6B1P14854 86 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 LEPP41159 167 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 C9orf47Q6ZRZ4 202 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 MAP1LC3AQ9H492 121 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 PDZD2O15018 2839 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 HBDP02042 147 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 USMG5Q96IX5 58 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 GOLT1BQ9Y3E0 138 aa7.85□□□□□ -1.15
LIMA1-201ENST00000341247 AGRNO00468 2067 aa7.84□□□□□ -1.15
LIMA1-201ENST00000341247 ITPR3Q14573 2671 aa7.84□□□□□ -1.15
LIMA1-201ENST00000341247 ANK3Q12955 4377 aaKnown RBP7.84□□□□□ -1.15
LIMA1-201ENST00000341247 IGHV7-4-1A0A0J9YVY3 117 aa7.84□□□□□ -1.15
LIMA1-201ENST00000341247 NUDT3O95989 172 aa7.84□□□□□ -1.15
LIMA1-201ENST00000341247 LINC01545Q5VT33 79 aa7.84□□□□□ -1.15
LIMA1-201ENST00000341247 SLC25A34Q6PIV7 304 aa7.84□□□□□ -1.15
LIMA1-201ENST00000341247 CRIP2P52943 208 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-201ENST00000341247 BEX4Q9NWD9 120 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-201ENST00000341247 GNRH2O43555 120 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 LINC01356Q8N9X3 169 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 IFI27L1Q96BM0 104 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 PSMG3-AS1Q96PY0 264 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 ST20Q9HBF5 79 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 DAZ1Q9NQZ3 744 aaKnown RBP7.83□□□□□ -1.16
LIMA1-201ENST00000341247 DKK2Q9UBU2 259 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 A0A0G2JLM5 398 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 ANXA2RQ3ZCQ2 193 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 ANKRD39Q53RE8 183 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 SMIM15Q7Z3B0 74 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 ZFAND2AQ8N6M9 145 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 PEF1Q9UBV8 284 aaKnown RBP7.83□□□□□ -1.16
LIMA1-201ENST00000341247 NOTCH3Q9UM47 2321 aa7.83□□□□□ -1.16
LIMA1-201ENST00000341247 TMEM8BA6NDV4 472 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 IGLV1-40P01703 118 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 PRSS1P07477 247 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 ZNF688P0C7X2 276 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 C14orf178Q8N769 122 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-201ENST00000341247 MRPS16Q9Y3D3 137 aaKnown RBP7.82□□□□□ -1.16
LIMA1-201ENST00000341247 WNK1Q9H4A3 2382 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 SOCS3O14543 225 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 DLEU1O43261 78 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 MGPP08493 103 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 TMEM158Q8WZ71 300 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 SCRT2Q9NQ03 307 aa7.82□□□□□ -1.16
LIMA1-201ENST00000341247 MRPL53Q96EL3 112 aaKnown RBP7.81□□□□□ -1.16
LIMA1-201ENST00000341247 CNFNQ9BYD5 112 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 NMUP48645 174 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 SYNJ2BPP57105 145 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 OR2K2Q8NGT1 345 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 SMPXQ9UHP9 88 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 PHLDA3Q9Y5J5 127 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 CR1P17927 2039 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 LINC00477Q96M19 166 aa7.81□□□□□ -1.16
LIMA1-201ENST00000341247 HELZ2Q9BYK8 2649 aaKnown RBP7.81□□□□□ -1.16
LIMA1-201ENST00000341247 A0A096LNT2 108 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 SLC25A16P16260 332 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 SRSF2Q01130 221 aaKnown RBP7.8□□□□□ -1.16
LIMA1-201ENST00000341247 MRPL52Q86TS9 123 aaKnown RBP7.8□□□□□ -1.16
LIMA1-201ENST00000341247 TRAV12-2A0A075B6T6 113 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 TRAV21A0A0B4J279 112 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 OVOL1O14753 267 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 DEFB136Q30KP8 78 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 PSMG4Q5JS54 123 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 ZNF843Q8N446 348 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 TTTY13Q9BZ97 58 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 ACANP16112 2415 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 H3BUA1 57 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 PPBPP02775 128 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 FLNAP21333 2647 aaKnown RBP7.8□□□□□ -1.16
LIMA1-201ENST00000341247 HIST2H2BCQ6DN03 193 aa7.8□□□□□ -1.16
LIMA1-201ENST00000341247 TRAV12-3A0A0B4J271 114 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 CBY3A6NI87 242 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 HOXA3O43365 443 aaPredicted RBP7.79□□□□□ -1.16
LIMA1-201ENST00000341247 CFHR3Q02985 330 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 RPL39LQ96EH5 51 aaKnown RBP7.79□□□□□ -1.16
LIMA1-201ENST00000341247 FOXC2Q99958 501 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 PPP1R14DQ9NXH3 145 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 C7orf71A4D174 169 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 PSMB8P28062 276 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 ASIPP42127 132 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 DSCR9P59020 149 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 KHDC1LQ5JSQ8 128 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 DUX3Q96PT4 197 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 C18orf65Q6ZTR6 163 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 NEGR1Q7Z3B1 354 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 JPT2Q9H910 190 aa7.79□□□□□ -1.16
LIMA1-201ENST00000341247 PCP2Q8IVA1 136 aa7.78□□□□□ -1.16
LIMA1-201ENST00000341247 NXT2Q9NPJ8 142 aaKnown RBP7.78□□□□□ -1.16
LIMA1-201ENST00000341247 ATP6V0BQ99437 205 aa7.78□□□□□ -1.16
LIMA1-201ENST00000341247 SMIM17P0DL12 118 aa7.78□□□□□ -1.16
LIMA1-201ENST00000341247 GATA3P23771 443 aa7.78□□□□□ -1.16
LIMA1-201ENST00000341247 FCER1GP30273 86 aa7.78□□□□□ -1.16
LIMA1-201ENST00000341247 Q5PR19 223 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms