RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 FAM236BA0A1B0GV22 79 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 M0R1B8 84 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 C2orf82Q6UX34 121 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 TMEM167AQ8TBQ9 72 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 ERCC8Q13216 396 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 EDA2RQ9HAV5 297 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 CSDC2Q9Y534 153 aaKnown RBP11.43□□□□□ -0.58
PTPRA-201ENST00000216877 PMVKQ15126 192 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 RNF185Q96GF1 192 aa11.43□□□□□ -0.58
PTPRA-201ENST00000216877 PAX8Q06710 450 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 C5orf47Q569G3 176 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 MYO18BQ8IUG5 2567 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 CREBBPQ92793 2442 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 PRR25Q96S07 402 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 ZNF256Q9Y2P7 627 aaPredicted RBP11.42□□□□□ -0.58
PTPRA-201ENST00000216877 DMXL1Q9Y485 3027 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 LOC400499M0QZD8 3231 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 CCL8P80075 99 aa11.42□□□□□ -0.58
PTPRA-201ENST00000216877 M0R381 172 aa11.41□□□□□ -0.58
PTPRA-201ENST00000216877 CDX4O14627 284 aaPredicted RBP11.41□□□□□ -0.58
PTPRA-201ENST00000216877 CEACAM4O75871 244 aa11.41□□□□□ -0.58
PTPRA-201ENST00000216877 IL17RELQ6ZVW7 336 aa11.41□□□□□ -0.58
PTPRA-201ENST00000216877 RNF125Q96EQ8 232 aa11.41□□□□□ -0.58
PTPRA-201ENST00000216877 TRAV17A0A0B4J275 112 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 H3BMM0 161 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 OVOL3O00110 214 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 CFC1BP0CG36 223 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 CFC1P0CG37 223 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 UBE2WQ96B02 151 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 NTN3O00634 580 aaPredicted RBP11.4□□□□□ -0.58
PTPRA-201ENST00000216877 UBE2D3P61077 147 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 UBE2D2P62837 147 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 RNF7Q9UBF6 113 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 PCSK5Q92824 1860 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 TNFAIP6P98066 277 aaPredicted RBP11.4□□□□□ -0.58
PTPRA-201ENST00000216877 ADIPOQQ15848 244 aa11.4□□□□□ -0.58
PTPRA-201ENST00000216877 TRGV11A0A075B6L2 103 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 IGHV3-66A0A0C4DH42 116 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 Q6ZS46 218 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 NOTCH3Q9UM47 2321 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 NPC2P61916 151 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 Q6ZS92 163 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 A4D1N5 150 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 MRPS12O15235 138 aaKnown RBP11.39□□□□□ -0.59
PTPRA-201ENST00000216877 TIMD4Q96H15 378 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 TMEM126AQ9H061 195 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 DSCAMO60469 2012 aa11.39□□□□□ -0.59
PTPRA-201ENST00000216877 SHANK2-AS3Q9BTD1 123 aa11.38□□□□□ -0.59
PTPRA-201ENST00000216877 LGALS3P17931 250 aaKnown RBP11.38□□□□□ -0.59
PTPRA-201ENST00000216877 S100A4P26447 101 aaKnown RBP11.38□□□□□ -0.59
PTPRA-201ENST00000216877 RPL13AP40429 203 aaKnown RBP11.38□□□□□ -0.59
PTPRA-201ENST00000216877 UBE2D1P51668 147 aa11.38□□□□□ -0.59
PTPRA-201ENST00000216877 MALRD1Q5VYJ5 2156 aa11.38□□□□□ -0.59
PTPRA-201ENST00000216877 RS1O15537 224 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 DLX6P56179 175 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 RASL10AQ92737 203 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 TRAV12-3A0A0B4J271 114 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 NPFFO15130 113 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 LINC01620Q4KN68 170 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 IGHV3-49A0A0A0MS15 119 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 C2orf66Q6UXQ4 117 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 GATD1Q8NB37 220 aa11.37□□□□□ -0.59
PTPRA-201ENST00000216877 IGKV1-17P01599 117 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 ATXN8Q156A1 80 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 ODF3Q96PU9 254 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 SMIM9A6NGZ8 99 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 LINC01559Q495D7 138 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 B9A039 149 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 CGB3P0DN86 165 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 CGB7P0DN87 165 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 COX7A1P24310 79 aa11.36□□□□□ -0.59
PTPRA-201ENST00000216877 ZFYVE26Q68DK2 2539 aa11.35□□□□□ -0.59
PTPRA-201ENST00000216877 HERVK_113P63121 156 aa11.35□□□□□ -0.59
PTPRA-201ENST00000216877 GFRALQ6UXV0 394 aa11.35□□□□□ -0.59
PTPRA-201ENST00000216877 FAM19A5Q7Z5A7 132 aaPredicted RBP11.35□□□□□ -0.59
PTPRA-201ENST00000216877 TMEM14CQ9P0S9 112 aa11.35□□□□□ -0.59
PTPRA-201ENST00000216877 CCL17Q92583 94 aa11.35□□□□□ -0.59
PTPRA-201ENST00000216877 CSPG4Q6UVK1 2322 aa11.35□□□□□ -0.59
PTPRA-201ENST00000216877 THBDP07204 575 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 MSMPQ1L6U9 139 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 TMEM101Q96IK0 257 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 PTPN13Q12923 2485 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 TIMM23O14925 209 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 RNF182Q8N6D2 247 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 NRGNQ92686 78 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 CD3EP07766 207 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 KLRB1Q12918 225 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 CFHR4Q92496 578 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 DYNLRB1Q9NP97 96 aa11.34□□□□□ -0.59
PTPRA-201ENST00000216877 TRAV8-3A0A0A6YYJ7 113 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 TRAV41A0A0B4J266 112 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 ADARB2-AS1A8MUL3 147 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 GAFA1Q96PS6 74 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 SPXQ9BT56 116 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 A0A0J9YY99 117 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 IGFBPL1Q8WX77 278 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 RPL39LQ96EH5 51 aaKnown RBP11.33□□□□□ -0.6
PTPRA-201ENST00000216877 SPRR3Q9UBC9 169 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 ZNF833PQ6ZTB9 187 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 C14orf178Q8N769 122 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 149 ms