RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 OR8A1Q8NGG7 326 aa9.45□□□□□ -0.9
SS18-222ENST00000582792 BLNKQ8WV28 456 aa9.45□□□□□ -0.9
SS18-222ENST00000582792 MBD3L1Q8WWY6 194 aa9.45□□□□□ -0.9
SS18-222ENST00000582792 PHYHIPLQ96FC7 376 aa9.45□□□□□ -0.9
SS18-222ENST00000582792 TRAV12-2A0A075B6T6 113 aa9.44□□□□□ -0.9
SS18-222ENST00000582792 BOLA2-SMG1P6H3BVE0 249 aa9.44□□□□□ -0.9
SS18-222ENST00000582792 SNRPCP09234 159 aaKnown RBP9.44□□□□□ -0.9
SS18-222ENST00000582792 TMED6Q8WW62 240 aa9.44□□□□□ -0.9
SS18-222ENST00000582792 Q9H8V8 135 aa9.44□□□□□ -0.9
SS18-222ENST00000582792 OTORQ9NRC9 128 aa9.44□□□□□ -0.9
SS18-222ENST00000582792 HMGB3O15347 200 aaKnown RBP9.43□□□□□ -0.9
SS18-222ENST00000582792 SULT1A2P50226 295 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 KRTAP10-2P60368 255 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 TTC32Q5I0X7 151 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 FAM74A1Q5RGS3 127 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 TMEM256Q8N2U0 113 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 OR10J6PQ8NGY7 276 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 RXFP4Q8TDU9 374 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 C16orf74Q96GX8 76 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 ODF3Q96PU9 254 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 KRTAP1-5Q9BYS1 174 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 Q9H3A6 140 aa9.43□□□□□ -0.9
SS18-222ENST00000582792 A0A1W2PRE2 83 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 RBAKDNA6NC62 111 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 MAP1LC3B2A6NCE7 125 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 EIF3GO75821 320 aaKnown RBP eCLIP9.42□□□□□ -0.9
SS18-222ENST00000582792 BTF3P20290 206 aaKnown RBP9.42□□□□□ -0.9
SS18-222ENST00000582792 CSN1S1P47710 185 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 TAS2R60P59551 318 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 RANP62826 216 aaKnown RBP9.42□□□□□ -0.9
SS18-222ENST00000582792 ICAM4Q14773 271 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 EXOC3-AS1Q8N2X6 119 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 LINC01587Q99440 93 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 MAP1LC3BQ9GZQ8 125 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 TIMM8BQ9Y5J9 83 aaPredicted RBP9.42□□□□□ -0.9
SS18-222ENST00000582792 ARL2-SNX15V9GYD0 113 aa9.42□□□□□ -0.9
SS18-222ENST00000582792 TRAV1-1A0A0B4J248 108 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 PGPA6NDG6 321 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 PRAC2D3DTV9 90 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 NPIPB6E9PJ23 425 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 M0R3E3 92 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 SLC25A5P05141 298 aaKnown RBP9.41□□□□□ -0.9
SS18-222ENST00000582792 NKX2-5P52952 324 aaPredicted RBP9.41□□□□□ -0.9
SS18-222ENST00000582792 HIST1H1AQ02539 215 aaPredicted RBP9.41□□□□□ -0.9
SS18-222ENST00000582792 FAM213BQ8TBF2 198 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 LINC00477Q96M19 166 aa9.41□□□□□ -0.9
SS18-222ENST00000582792 NKX6-2Q9C056 277 aaPredicted RBP9.41□□□□□ -0.9
SS18-222ENST00000582792 DMBT1Q9UGM3 2413 aaPredicted RBP9.4□□□□□ -0.9
SS18-222ENST00000582792 SERTM2A0A1B0GWG4 89 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 A0A1W2PPQ1 181 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 H2AFB1P0C5Y9 115 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 HTN1P15515 57 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 FHITP49789 147 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 PPT1P50897 306 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 ZNF493Q6ZR52 646 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 C9orf47Q6ZRZ4 202 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 RNASE8Q8TDE3 154 aaKnown RBP9.4□□□□□ -0.9
SS18-222ENST00000582792 UPK3BQ9BT76 320 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 NOP10Q9NPE3 64 aaKnown RBP9.4□□□□□ -0.9
SS18-222ENST00000582792 PPP1R14DQ9NXH3 145 aa9.4□□□□□ -0.9
SS18-222ENST00000582792 TRAV26-1A0A087WT03 109 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 TRBV7-9A0A0J9YWB2 115 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 DIRC3C9JPN6 131 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 TEX46H3BTG2 121 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 C5orf17Q8NAS9 161 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 CMTM2Q8TAZ6 248 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 TMEM263Q8WUH6 116 aaKnown RBP9.39□□□□□ -0.91
SS18-222ENST00000582792 SFT2D1Q8WV19 159 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 TCEAL7Q9BRU2 100 aa9.39□□□□□ -0.91
SS18-222ENST00000582792 NMBP08949 121 aa9.38□□□□□ -0.91
SS18-222ENST00000582792 CDKN1BP46527 198 aa9.38□□□□□ -0.91
SS18-222ENST00000582792 FGF8P55075 233 aaPredicted RBP9.38□□□□□ -0.91
SS18-222ENST00000582792 OR5I1Q13606 314 aa9.38□□□□□ -0.91
SS18-222ENST00000582792 LINC00612Q8N6U2 182 aa9.38□□□□□ -0.91
SS18-222ENST00000582792 BOLA1Q9Y3E2 137 aa9.38□□□□□ -0.91
SS18-222ENST00000582792 LENEPQ9Y5L5 61 aa9.38□□□□□ -0.91
SS18-222ENST00000582792 FBLL1A6NHQ2 334 aaKnown RBP9.37□□□□□ -0.91
SS18-222ENST00000582792 FAM74A7A6NL05 159 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 EPM2AB3EWF7 344 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 H7BYZ3 331 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 CT45A10P0DMU9 189 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 LEPP41159 167 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 ESRGQ1W209 222 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 TMEM78Q5T7P6 136 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 IQCF2Q8IXL9 164 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 FAM19A4Q96LR4 140 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 C20orf144Q9BQM9 153 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 AGPAT4-IT1Q9H0P7 198 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 TMPRSS5Q9H3S3 457 aa9.37□□□□□ -0.91
SS18-222ENST00000582792 MRPS16Q9Y3D3 137 aaKnown RBP9.37□□□□□ -0.91
SS18-222ENST00000582792 FAT1Q14517 4588 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 A0A0J9YY99 117 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 GGTLC3B5MD39 225 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 H3BNG1 76 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 CRISP2P16562 243 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 HOXA5P20719 270 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 SUMO1P63165 101 aaKnown RBP9.36□□□□□ -0.91
SS18-222ENST00000582792 BLOC1S1P78537 153 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 ZNF492Q9P255 531 aa9.36□□□□□ -0.91
SS18-222ENST00000582792 EPDR1Q9UM22 224 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 220.6 ms