RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PRAC2D3DTV9 90 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 NPIPB6E9PJ23 425 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 LTAP01374 205 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 ERVFC1-1P60608 527 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 RHEBQ15382 184 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 SMUG1Q53HV7 270 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 ACTL10Q5JWF8 245 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 Q86TA4 180 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 VGLL1Q99990 258 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 AGPAT4-IT1Q9H0P7 198 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 SAV1Q9H4B6 383 aaPredicted RBP8.72□□□□□ -1.01
LDLR-212ENST00000560467 SDF2L1Q9HCN8 221 aa8.72□□□□□ -1.01
LDLR-212ENST00000560467 TRAV8-1A0A0A6YYK1 113 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 A0A0J9YX75 114 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 IZUMO1RA6ND01 250 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 GPX1P07203 203 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 ERCC8Q13216 396 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 LINC01551Q86U37 167 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 OCC1Q8TAD7 63 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 MAP6D1Q9H9H5 199 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 ZNF492Q9P255 531 aa8.71□□□□□ -1.02
LDLR-212ENST00000560467 XKRY2A2RUG3 117 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 ZNF705DP0CH99 300 aaPredicted RBP8.7□□□□□ -1.02
LDLR-212ENST00000560467 ZNF705BP0CI00 300 aaPredicted RBP8.7□□□□□ -1.02
LDLR-212ENST00000560467 RPL23P62829 140 aaKnown RBP8.7□□□□□ -1.02
LDLR-212ENST00000560467 FAM162BQ5T6X4 162 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 PRR27Q6MZM9 219 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 FAM24BQ8N5W8 94 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 CLRN3Q8NCR9 226 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 ANAPC16Q96DE5 110 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 ODF3Q96PU9 254 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 CTDSP1Q9GZU7 261 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 TUBA4BQ9H853 241 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 RPS10P5Q9NQ39 176 aa8.7□□□□□ -1.02
LDLR-212ENST00000560467 KNCNA6PVL3 124 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 FABP5P3A8MUU1 101 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 F6UB75 175 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 GCGP01275 180 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 IGKV3-20P01619 116 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 IGLV2-11P01706 119 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 P01737 135 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 AMBPP02760 352 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 HLA-DRB4P13762 266 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 ADCYAP1P18509 176 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 RPL19P84098 196 aaKnown RBP8.69□□□□□ -1.02
LDLR-212ENST00000560467 APRG1Q8IVJ8 170 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 NHLRC2Q8NBF2 726 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 OR10G8Q8NGN5 311 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 Q8TAT8 98 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 IGF2BP2-AS1Q96M15 143 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 HLA-DRB4X5D2U9 266 aa8.69□□□□□ -1.02
LDLR-212ENST00000560467 H3BMM0 161 aa8.68□□□□□ -1.02
LDLR-212ENST00000560467 S100PP25815 95 aa8.68□□□□□ -1.02
LDLR-212ENST00000560467 IBA57Q5T440 356 aaKnown RBP8.68□□□□□ -1.02
LDLR-212ENST00000560467 SFRP2Q96HF1 295 aa8.68□□□□□ -1.02
LDLR-212ENST00000560467 CLUHP3Q96NS8 147 aa8.68□□□□□ -1.02
LDLR-212ENST00000560467 TRBV20OR9-2A0A075B6H5 130 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 TRAV21A0A0B4J279 112 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 C7orf77A4D0Y5 90 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 PGPEP1LA6NFU8 196 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 ZNF705GA8MUZ8 300 aaPredicted RBP8.67□□□□□ -1.02
LDLR-212ENST00000560467 H7BYZ3 331 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 GATCO43716 136 aaKnown RBP8.67□□□□□ -1.02
LDLR-212ENST00000560467 CD7P09564 240 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 RNASE4P34096 147 aaKnown RBP8.67□□□□□ -1.02
LDLR-212ENST00000560467 CDKN1BP46527 198 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 RPS20P60866 119 aaKnown RBP8.67□□□□□ -1.02
LDLR-212ENST00000560467 ODF3L2Q3SX64 289 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 MORN3Q6PF18 240 aaPredicted RBP8.67□□□□□ -1.02
LDLR-212ENST00000560467 KCNIP4Q6PIL6 250 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 ISOC2Q96AB3 205 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 MLST8Q9BVC4 326 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 C1QTNF4Q9BXJ3 329 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 OSTCQ9NRP0 149 aa8.67□□□□□ -1.02
LDLR-212ENST00000560467 A0A087WWC5 75 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 ORM1P02763 201 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 PFN1P07737 140 aaKnown RBP8.66□□□□□ -1.02
LDLR-212ENST00000560467 PRB4P10163 310 aaPredicted RBP8.66□□□□□ -1.02
LDLR-212ENST00000560467 CRISP2P16562 243 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 OR5I1Q13606 314 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 FAM231DQ6ZW35 169 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 WFDC10AQ9H1F0 79 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 SMCO4Q9NRQ5 59 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 TMEM242Q9NWH2 141 aa8.66□□□□□ -1.02
LDLR-212ENST00000560467 TMEM189A5PLL7 270 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 RBMY1BA6NDE4 496 aaKnown RBP8.65□□□□□ -1.02
LDLR-212ENST00000560467 CXorf65A6NEN9 183 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 RBMY1EA6NEQ0 496 aaKnown RBP8.65□□□□□ -1.02
LDLR-212ENST00000560467 A8MWL6 223 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 J3KRW8 73 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 IGLV2-8P01709 118 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 RBMY1DP0C7P1 496 aaKnown RBP8.65□□□□□ -1.02
LDLR-212ENST00000560467 DEFB1P60022 68 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 RNF212Q495C1 297 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 GDF5OSQ5U4N7 250 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 LINC00322Q6ZN03 302 aaPredicted RBP8.65□□□□□ -1.02
LDLR-212ENST00000560467 COX8CQ7Z4L0 72 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 IL17DQ8TAD2 202 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 BORCS7Q96B45 105 aa8.65□□□□□ -1.02
LDLR-212ENST00000560467 ZC2HC1AQ96GY0 325 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms