RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PCNPQ8WW12 178 aaKnown RBP7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 ARPC5LQ9BPX5 153 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 NOP10Q9NPE3 64 aaKnown RBP7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 ZNF492Q9P255 531 aa7.24□□□□□ -1.25
CCDC88C-206ENST00000553437 KRBOX1C9JBD0 128 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 P0DMU3 169 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 FAM231AP0DMU4 169 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 FAM231CP0DMU5 169 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 PRR9Q5T870 116 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 Q8N3U1 123 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 OR2G3Q8NGZ4 309 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 SUN5Q8TC36 379 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 PYGO2Q9BRQ0 406 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 LINC00467Q9BRT7 94 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 Q9H3A6 140 aa7.23□□□□□ -1.25
CCDC88C-206ENST00000553437 TRBV7-9A0A0J9YWB2 115 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 RBAKDNA6NC62 111 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 ATP6V0CP27449 155 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 RNASE4P34096 147 aaKnown RBP7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 ZNF138P52744 262 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 ZNF266Q14584 549 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 TMEM78Q5T7P6 136 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 PQLC2Q6ZP29 291 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 Q6ZQT7 251 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 HSD17B11Q8NBQ5 300 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 OR10G4Q8NGN3 311 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 OR10G9Q8NGN4 311 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 OR10G7Q8NGN6 311 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 STOML3Q8TAV4 291 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 PSMG3Q9BT73 122 aaPredicted RBP7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 ZNF471Q9BX82 626 aaPredicted RBP7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 DNAH17Q9UFH2 4485 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 FAT2Q9NYQ8 4349 aa7.22□□□□□ -1.25
CCDC88C-206ENST00000553437 A0A1W2PPV4 95 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 DIRC3C9JPN6 131 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 ATP5G1P05496 136 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 GPX1P07203 203 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 TPT1P13693 172 aaKnown RBP7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 CSN1S1P47710 185 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 ATP5G3P48201 142 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 DAZ2Q13117 558 aaKnown RBP7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 ANXA2RQ3ZCQ2 193 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 C11orf72Q8NBR9 251 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 Q8TAT8 98 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 SH3BGRL3Q9H299 93 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 OTORQ9NRC9 128 aa7.21□□□□□ -1.26
CCDC88C-206ENST00000553437 PGPA6NDG6 321 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 F5H768 121 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 HMGB3O15347 200 aaKnown RBP7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 STAG3L2P0CL84 134 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 STAG3L3P0CL85 134 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 CDC34P49427 236 aaPredicted RBP7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 EIF5AP63241 154 aaKnown RBP7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 SERF2P84101 59 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 RPL7L1Q6DKI1 246 aaKnown RBP7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 ARL6IP6Q8N6S5 226 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 C15orf53Q8NAA6 179 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 RXFP4Q8TDU9 374 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 RAB24Q969Q5 203 aa7.2□□□□□ -1.26
CCDC88C-206ENST00000553437 GAGE12BA1L429 117 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 SNURFLB1AK76 121 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 TAAR5O14804 337 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 GAGE7O76087 117 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 MBP02144 154 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 GAGE12FP0CL80 117 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 GAGE12GP0CL81 117 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 GAGE12IP0CL82 117 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 ARL14EPLP0DKL9 152 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 RNF212Q495C1 297 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 UQCC3Q6UW78 93 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 Q6ZTI0 123 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 TMED6Q8WW62 240 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 GSN-AS1Q9NRJ2 163 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 TP53TG3Q9ULZ0 132 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 TMA7Q9Y2S6 64 aaKnown RBP7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 LENEPQ9Y5L5 61 aa7.19□□□□□ -1.26
CCDC88C-206ENST00000553437 IGHV1OR15-1A0A075B7D0 117 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 RAB19A4D1S5 217 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 HOXA5P20719 270 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 GCHFRP30047 84 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 TCL1AP56279 114 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 Q6AWC8 147 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 EIF5AL1Q6IS14 154 aaKnown RBP7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 SSX7Q7RTT5 188 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 GNPNAT1Q96EK6 184 aaPredicted RBP7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 TVP23CQ96ET8 276 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 C18orf15Q96N68 181 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 CYTL1Q9NRR1 136 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 KLF12Q9Y4X4 402 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 KIAA1109Q2LD37 5005 aa7.18□□□□□ -1.26
CCDC88C-206ENST00000553437 TRAV8-1A0A0A6YYK1 113 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 TEX46H3BTG2 121 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 SPINK4O60575 86 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 GNG5P63218 68 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 ZNF726P1Q15940 193 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 LGALS9BQ3B8N2 356 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 FAM74A1Q5RGS3 127 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 IBA57Q5T440 356 aaKnown RBP7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 Q6ZR54 194 aa7.17□□□□□ -1.26
CCDC88C-206ENST00000553437 GOLT1AQ6ZVE7 132 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms