RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 KRTAP2-4Q9BYR9 128 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 KRTAP2-1Q9BYU5 128 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 SPANXCQ9NY87 97 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 PLAC8Q9NZF1 115 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 BOKQ9UMX3 212 aaPredicted RBP0.14□□□□□ -2.39
VPS13A-213ENST00000539950 GINS2Q9Y248 185 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 NDUFAF1Q9Y375 327 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 PTPRFP10586 1907 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 NAV2Q8IVL1 2488 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 CITO14578 2027 aa0.14□□□□□ -2.39
VPS13A-213ENST00000539950 ARHGAP31Q2M1Z3 1444 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 TRAV23DV6A0A075B6W5 121 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 A0A096LNT2 108 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 C3orf85A0A1B0GTC6 90 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 A0A1W2PPB8 328 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 A0A1W2PRS3 328 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 ARL5CA6NH57 179 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 KIR3DP1A8MWS1 328 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 NEFHP12036 1026 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 SLC25A4P12235 298 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 CRYGSP22914 178 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 ETV6P41212 452 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 CAV3P56539 151 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 LSM3P62310 102 aaKnown RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 QRFPP83859 136 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 SAMD13Q5VXD3 122 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 C3orf62Q6ZUJ4 267 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 SMIM15Q7Z3B0 74 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 C5orf17Q8NAS9 161 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 SKA2Q8WVK7 121 aaPredicted RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 PLAC4Q8WY50 150 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 SMR3AQ99954 134 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 SPANXA1Q9NS26 97 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 JPT1Q9UK76 154 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 HSPB11Q9Y547 144 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 UHRF1BP1LA0JNW5 1464 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 NUP210Q8TEM1 1887 aaPredicted RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 ASH1LQ9NR48 2969 aaKnown RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 MAST4O15021 2626 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 ASCC3Q8N3C0 2202 aaKnown RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 OVOS2A0A0G2JMS6 1433 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 BLMP54132 1417 aaPredicted RBP0.13□□□□□ -2.39
VPS13A-213ENST00000539950 DSPPQ9NZW4 1301 aa0.13□□□□□ -2.39
VPS13A-213ENST00000539950 TRAV36DV7A0A075B6V5 113 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 TRAV2A0A0B4J234 112 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 PNMA8CA0A1B0GUJ8 204 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 GNG14A0A1W2PPG7 69 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 C5orf58C9J3I9 102 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 TSTD3H0UI37 97 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 H0YJX3 145 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 J3KT08 172 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 SULT1C4O75897 302 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 HBDP02042 147 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 EVI2AP22794 236 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 FXYD6P3P58550 94 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 RPL37P61927 97 aaKnown RBP0.12□□□□□ -2.39
VPS13A-213ENST00000539950 BLCAPP62952 87 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 NEDD8Q15843 81 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 MORN2Q502X0 79 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 GLYATL3Q5SZD4 288 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 CSAG1Q6PB30 78 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 TAC4Q86UU9 113 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 TEX29Q8N6K0 151 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 C5orf56Q8N8D9 126 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 OR4S1Q8NGB4 309 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 DMAC1Q96GE9 116 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 FAM103A1Q9BTL3 118 aaKnown RBP0.12□□□□□ -2.39
VPS13A-213ENST00000539950 HEATR1Q9H583 2144 aaKnown RBP0.12□□□□□ -2.39
VPS13A-213ENST00000539950 FKBP11Q9NYL4 201 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 METTL1Q9UBP6 276 aaKnown RBP0.12□□□□□ -2.39
VPS13A-213ENST00000539950 TRAPPC2LQ9UL33 140 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 FER1L6Q2WGJ9 1857 aa0.12□□□□□ -2.39
VPS13A-213ENST00000539950 PTPRDP23468 1912 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 CPDO75976 1380 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.11□□□□□ -2.39
VPS13A-213ENST00000539950 BORCS7-ASMTA0A0B4J1R7 106 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 CXorf51AA0A1B0GTR3 108 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 TMEM189A5PLL7 270 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 HIGD1CA8MV81 97 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 SLC25A5P05141 298 aaKnown RBP0.11□□□□□ -2.39
VPS13A-213ENST00000539950 SCGB1A1P11684 91 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 S100GP29377 79 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 GTF2A1P52655 376 aaPredicted RBP0.11□□□□□ -2.39
VPS13A-213ENST00000539950 ZNF137PP52743 207 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 FXYD3Q14802 87 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 RHOHQ15669 191 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 SPINK13Q1W4C9 94 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 HSD17B12Q53GQ0 312 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 LYPD5Q6UWN5 251 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 TMEM91Q6ZNR0 172 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 TMEM35BQ8NCS4 154 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 OTOSQ8NHW6 89 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 AP1S3Q96PC3 154 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 SELENOSQ9BQE4 189 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 KIDINS220Q9ULH0 1771 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 ZNF462Q96JM2 2506 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 MED12Q93074 2177 aa0.11□□□□□ -2.39
VPS13A-213ENST00000539950 CDK12Q9NYV4 1490 aaPredicted RBP0.1□□□□□ -2.39
VPS13A-213ENST00000539950 ANKRD30AQ9BXX3 1397 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 144.4 ms