RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 TSC2P49815 1807 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 PIEZO1Q92508 2521 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 SDHAF1A6NFY7 115 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 TP53TG1Q9Y2A0 90 aa12.87□□□□□ -0.35
PCDHA3-201ENST00000522353 NEGR1Q7Z3B1 354 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 DLX4Q92988 240 aaPredicted RBP12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 MRAPQ8TCY5 172 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 ESDP10768 282 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 C2orf66Q6UXQ4 117 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 PTPRDP23468 1912 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 NKAPP1Q8N9T2 125 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 RNF138Q8WVD3 245 aa12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 SPAG8Q99932 426 aaPredicted RBP12.86□□□□□ -0.35
PCDHA3-201ENST00000522353 CSPG4Q6UVK1 2322 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 TMEM213A2RRL7 107 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 DNAJC30Q96LL9 226 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 SIGMAR1Q99720 223 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 ZNF124Q15973 351 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 PTPN13Q12923 2485 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 FAM231DQ6ZW35 169 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 PLA2G5P39877 138 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 Q8NFD4 153 aa12.85□□□□□ -0.35
PCDHA3-201ENST00000522353 CGB7P0DN87 165 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 Q8N8P6 123 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 KLF12Q9Y4X4 402 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 MYLKQ15746 1914 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 ANKHD1Q8IWZ3 2542 aaKnown RBP12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 A0A087X0K7 114 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 C2orf82Q6UX34 121 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 C11orf53Q8IXP5 236 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 IGF2BP2-AS1Q96M15 143 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 TEX48A0A1B0GUV7 120 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 IGHV4-38-2P0DP08 117 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 RHOHQ15669 191 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 PYY3Q5JQD4 70 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 MRPL52Q86TS9 123 aaKnown RBP12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 ZNF491Q8N8L2 437 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 GAGE6Q13070 117 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 CHAC1Q9BUX1 264 aa12.84□□□□□ -0.35
PCDHA3-201ENST00000522353 MPV17L2Q567V2 206 aa12.83□□□□□ -0.35
PCDHA3-201ENST00000522353 PYGO2Q9BRQ0 406 aa12.83□□□□□ -0.35
PCDHA3-201ENST00000522353 LHBP01229 141 aa12.83□□□□□ -0.36
PCDHA3-201ENST00000522353 NLRC5Q86WI3 1866 aa12.83□□□□□ -0.36
PCDHA3-201ENST00000522353 MED13Q9UHV7 2174 aa12.83□□□□□ -0.36
PCDHA3-201ENST00000522353 C18orf32Q8TCD1 76 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 PLCE1Q9P212 2302 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 ANAPC1Q9H1A4 1944 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 GP9P14770 177 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 RSPO3Q9BXY4 272 aaPredicted RBP12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 SPRY4Q9C004 299 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 IGLC7A0M8Q6 106 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 PMVKQ15126 192 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 FBXL19-AS1Q494R0 122 aa12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 MRPL53Q96EL3 112 aaKnown RBP12.82□□□□□ -0.36
PCDHA3-201ENST00000522353 NAA38Q9BRA0 125 aaKnown RBP12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 ANAPC13Q9BS18 74 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 ANGP03950 147 aaKnown RBP12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 FRMPD3Q5JV73 1810 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 KIR3DS1Q14943 382 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 VOPP1Q96AW1 172 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 LENEPQ9Y5L5 61 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 HLA-DRB4P13762 266 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 GAGE2BQ13066 116 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 GAGE2EQ4V326 116 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 GAGE2DQ9UEU5 116 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 HLA-DRB4X5D2U9 266 aa12.81□□□□□ -0.36
PCDHA3-201ENST00000522353 MYO18BQ8IUG5 2567 aa12.8□□□□□ -0.36
PCDHA3-201ENST00000522353 DEFB136Q30KP8 78 aa12.8□□□□□ -0.36
PCDHA3-201ENST00000522353 PLXNA2O75051 1894 aa12.8□□□□□ -0.36
PCDHA3-201ENST00000522353 PIFOQ8TCI5 191 aa12.8□□□□□ -0.36
PCDHA3-201ENST00000522353 CD5LO43866 347 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 C10orf91Q5T1B1 145 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 ZNF114Q8NC26 417 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 NPBQ8NG41 125 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 ZNF625Q96I27 306 aaPredicted RBP12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 CYYR1Q96J86 154 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 IGHV3-38A0A0C4DH36 116 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 A8MWP6 167 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 TMEM126AQ9H061 195 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 NUP210Q8TEM1 1887 aaPredicted RBP12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 VWC2LB2RUY7 222 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 C9JQL5 133 aa12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 HELZP42694 1942 aaKnown RBP12.79□□□□□ -0.36
PCDHA3-201ENST00000522353 IGHV1-24A0A0C4DH33 117 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 NRGNQ92686 78 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 IGHV7-81A0A0B4J1V7 117 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 PKIGQ9Y2B9 76 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 PFN2P35080 140 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 BLCAPP62952 87 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 ZNF726P1Q15940 193 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 ZNF493Q6ZR52 646 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 RNF152Q8N8N0 203 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 NOP10Q9NPE3 64 aaKnown RBP12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 TRAV8-3A0A0A6YYJ7 113 aa12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 KLF5Q13887 457 aaPredicted RBP12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 MRPL51Q4U2R6 128 aaKnown RBP12.78□□□□□ -0.36
PCDHA3-201ENST00000522353 C11orf52Q96A22 123 aa12.77□□□□□ -0.36
PCDHA3-201ENST00000522353 FXYD5Q96DB9 178 aa12.77□□□□□ -0.36
PCDHA3-201ENST00000522353 SNHG12Q9BXW3 62 aa12.77□□□□□ -0.37
PCDHA3-201ENST00000522353 A0A1W2PNU3 283 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms