RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ORAOV1Q8WV07 137 aa12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 VPREB3Q9UKI3 123 aa12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 HIVEP1P15822 2718 aa12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 IGKV2-40A0A087WW87 121 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 IGKV2D-40P01614 121 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 FAM104BQ5XKR9 115 aa12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 ZNF502Q8TBZ5 544 aa12.37□□□□□ -0.43
SQSTM1-213ENST00000510187 MXRA5Q9NR99 2828 aa12.36□□□□□ -0.43
SQSTM1-213ENST00000510187 NPSP0C0P6 89 aa12.36□□□□□ -0.43
SQSTM1-213ENST00000510187 PRSS3P2Q8NHM4 247 aa12.36□□□□□ -0.43
SQSTM1-213ENST00000510187 ASCL2Q99929 193 aa12.36□□□□□ -0.43
SQSTM1-213ENST00000510187 TPPP3Q9BW30 176 aa12.36□□□□□ -0.43
SQSTM1-213ENST00000510187 SMAD5-AS1Q9Y6J3 95 aa12.36□□□□□ -0.43
SQSTM1-213ENST00000510187 CSN3P07498 182 aa12.35□□□□□ -0.43
SQSTM1-213ENST00000510187 ZNF138P52744 262 aa12.35□□□□□ -0.43
SQSTM1-213ENST00000510187 ZNF747Q9BV97 191 aa12.35□□□□□ -0.43
SQSTM1-213ENST00000510187 RBAKDNA6NC62 111 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 INAFM1C9JVW0 142 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 IGHV3-23P01764 117 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 HINT1P49773 126 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 SLC25A34Q6PIV7 304 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 ORMDL3Q8N138 153 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 DUX5Q96PT3 197 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 ANK3Q12955 4377 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 IGLC6P0CF74 106 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 FER1L6-AS1Q8NA97 138 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 PRELID3AQ96N28 172 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 SLC50A1Q9BRV3 221 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 ZFAND3Q9H8U3 227 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 SCRT2Q9NQ03 307 aa12.34□□□□□ -0.43
SQSTM1-213ENST00000510187 hDV102S1A0JD36 115 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 IGHG4P01861 327 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 BLCAPP62952 87 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 C15orf32Q32M92 178 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 UNQ5815/PRO19632Q6UWF5 114 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 TMEM86BQ8N661 226 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 PMCHL2Q9BQD1 86 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 MTORP42345 2549 aa12.33□□□□□ -0.44
SQSTM1-213ENST00000510187 TMEM213A2RRL7 107 aa12.32□□□□□ -0.44
SQSTM1-213ENST00000510187 D6R8Y8 96 aa12.32□□□□□ -0.44
SQSTM1-213ENST00000510187 DPF1Q92782 380 aa12.32□□□□□ -0.44
SQSTM1-213ENST00000510187 CNFNQ9BYD5 112 aa12.32□□□□□ -0.44
SQSTM1-213ENST00000510187 TMSB15BA0A087X1C1 80 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 DNAJC9-AS1A6NH13 148 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 LINC01548A6NM66 108 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 ATP6V0E1O15342 81 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 GPR183P32249 361 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 RHOGP84095 191 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 MRPL51Q4U2R6 128 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 MRPL53Q96EL3 112 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 ATP6V0BQ99437 205 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 VGLL1Q99990 258 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 NPFFR1Q9GZQ6 430 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 SIGLEC8Q9NYZ4 499 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 COX11Q9Y6N1 276 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 BUB3O43684 328 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 IFI27P40305 119 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 AMN1Q8IY45 258 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 ZNF738Q8NE65 137 aa12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 ZNF418Q8TF45 676 aaPredicted RBP12.31□□□□□ -0.44
SQSTM1-213ENST00000510187 F8P00451 2351 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 FABP5P3A8MUU1 101 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 ZNF80P51504 273 aaPredicted RBP12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 ECSCRQ19T08 205 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 LINC01559Q495D7 138 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 Q6ZS46 218 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 Q8TAT8 98 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 EEF1AKMT3Q96AZ1 226 aa12.3□□□□□ -0.44
SQSTM1-213ENST00000510187 A0A096LNJ9 63 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 TRBV7-1A0A0A6YYK4 115 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 IGHG2P01859 326 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 PPBPP02775 128 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 C12orf54Q6X4T0 127 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 ESM1Q9NQ30 184 aa12.29□□□□□ -0.44
SQSTM1-213ENST00000510187 CLEC3BP05452 202 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 PRB4P10163 310 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 LGALS9BQ3B8N2 356 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 LGALS9CQ6DKI2 356 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 CCDC140Q96MF4 163 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 HBDP02042 147 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 COX8AP10176 69 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 HLA-DMBP28068 263 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 HIST1H1AQ02539 215 aaPredicted RBP12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 TWIST1Q15672 202 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 PPP1R14DQ9NXH3 145 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 LINC00527Q9UJ94 153 aa12.28□□□□□ -0.44
SQSTM1-213ENST00000510187 CLPSL1A2RUU4 121 aa12.27□□□□□ -0.45
SQSTM1-213ENST00000510187 LINC01546A6NGU7 62 aa12.27□□□□□ -0.45
SQSTM1-213ENST00000510187 G3V318 75 aa12.27□□□□□ -0.45
SQSTM1-213ENST00000510187 CKS2P33552 79 aa12.27□□□□□ -0.45
SQSTM1-213ENST00000510187 OR1N2Q8NGR9 330 aa12.27□□□□□ -0.45
SQSTM1-213ENST00000510187 TRAV41A0A0B4J266 112 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 CRLF1O75462 422 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 IGF1P05019 195 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 CRIP2P52943 208 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 HILS1P60008 231 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 BVES-AS1Q5T3Y7 98 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 ZNF575Q86XF7 245 aa12.26□□□□□ -0.45
SQSTM1-213ENST00000510187 METTL26Q96S19 204 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms