RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 FER1L6-AS1Q8NA97 138 aa5.31□□□□□ -1.56
USP39-219ENST00000496047 MAPK1IP1LQ8NDC0 245 aa5.31□□□□□ -1.56
USP39-219ENST00000496047 SPATA3Q8NHX4 192 aa5.31□□□□□ -1.56
USP39-219ENST00000496047 LINC00477Q96M19 166 aa5.31□□□□□ -1.56
USP39-219ENST00000496047 SMAD5-AS1Q9Y6J3 95 aa5.31□□□□□ -1.56
USP39-219ENST00000496047 CSPG4Q6UVK1 2322 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 IGHV3OR16-13A0A075B7E8 117 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 IGHV3-49A0A0A0MS15 119 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 IGHV3-74A0A0B4J1X5 117 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 ZNF705FA8MVS1 300 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 HOXA3O43365 443 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 ZNF324O75467 553 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 GPX1P07203 203 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 RNASE1P07998 156 aaKnown RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 ZNF705DP0CH99 300 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 ZNF705BP0CI00 300 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 PKIAP61925 76 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 SLAQ13239 276 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 KIAA1644Q3SXP7 199 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 RNASEKQ6P5S7 137 aaKnown RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 LINC00322Q6ZN03 302 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 C9orf47Q6ZRZ4 202 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 BCL6BQ8N143 479 aaPredicted RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 GATD1Q8NB37 220 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 CHCHD1Q96BP2 118 aaKnown RBP5.3□□□□□ -1.56
USP39-219ENST00000496047 UBE2E2Q96LR5 201 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 RHPN1-AS1Q9BWJ2 59 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 PRDM13Q9H4Q3 707 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 PPP1R14DQ9NXH3 145 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 PEMTQ9UBM1 199 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 X6R8D5 127 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 ATRQ13535 2644 aa5.3□□□□□ -1.56
USP39-219ENST00000496047 LOC102724200A0A096LPH7 203 aaPredicted RBP5.29□□□□□ -1.56
USP39-219ENST00000496047 TRAV21A0A0B4J279 112 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 TRBV7-9A0A0J9YWB2 115 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 C20orf202A1L168 122 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 IFITM10A6NMD0 228 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 M0R2Z0 102 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 ARMS2P0C7Q2 107 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 NTF3P20783 257 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 HLA-DMBP28068 263 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 CTRLP40313 264 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 KRTAP10-9P60411 292 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 SNRPD3P62318 126 aaKnown RBP5.29□□□□□ -1.56
USP39-219ENST00000496047 CACNG7P62955 275 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 IL17RELQ6ZVW7 336 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 Q8N1Y9 231 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 TMEM256Q8N2U0 113 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 RNF182Q8N6D2 247 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 Q8TAT8 98 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 C18orf32Q8TCD1 76 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 GTSF1Q8WW33 167 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 DPF1Q92782 380 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 FOXC2Q99958 501 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 VGLL1Q99990 258 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 ALKBH7Q9BT30 221 aaPredicted RBP5.29□□□□□ -1.56
USP39-219ENST00000496047 ZNF702PQ9H963 129 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 SMPXQ9UHP9 88 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 NAGKQ9UJ70 344 aa5.29□□□□□ -1.56
USP39-219ENST00000496047 FBN1P35555 2871 aaKnown RBP5.29□□□□□ -1.56
USP39-219ENST00000496047 TMSB15BA0A087X1C1 80 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 LGALS9O00182 355 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 TRBV12-3P01733 135 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 APOHP02749 345 aaPredicted RBP5.28□□□□□ -1.56
USP39-219ENST00000496047 PPBPP02775 128 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 OR5AL1P0C617 328 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 GZMBP10144 247 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 LEPP41159 167 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 ERCC8Q13216 396 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 TWIST1Q15672 202 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 TMEM95Q3KNT9 176 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 KHDC1LQ5JSQ8 128 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 CRYBG3Q68DQ2 2970 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 LYZL1Q6UWQ5 148 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 UNQ9165/PRO28630Q6UXU0 137 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 ZNF493Q6ZR52 646 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 FA2HQ7L5A8 372 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 WFDC3Q8IUB2 231 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 KLK15Q9H2R5 256 aa5.28□□□□□ -1.56
USP39-219ENST00000496047 TRAV8-2A0A0B4J237 113 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 CD5LO43866 347 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 DUSP14O95147 198 aaKnown RBP5.27□□□□□ -1.57
USP39-219ENST00000496047 S100A4P26447 101 aaKnown RBP5.27□□□□□ -1.57
USP39-219ENST00000496047 TSPOP30536 169 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 KRTDAPP60985 99 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 DEFA6Q01524 100 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 PMCHL1Q16048 86 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 IGFL4Q6B9Z1 124 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 EBLN2Q6P2I7 272 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 DCHS2Q6V1P9 2916 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 ORMDL3Q8N138 153 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 Q8N2B8 174 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 VAMP8Q9BV40 100 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 AGPAT4-IT1Q9H0P7 198 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 GSN-AS1Q9NRJ2 163 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 HSPB8Q9UJY1 196 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 LAMTOR2Q9Y2Q5 125 aa5.27□□□□□ -1.57
USP39-219ENST00000496047 STAB1Q9NY15 2570 aa5.26□□□□□ -1.57
USP39-219ENST00000496047 IGKV3-7A0A075B6H7 116 aa5.26□□□□□ -1.57
USP39-219ENST00000496047 A0A1B0GUS0 222 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms