RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 LINC00305Q7Z4B0 112 aa0.1□□□□□ -2.39
SMC4-223ENST00000493695 STX12Q86Y82 276 aa0.1□□□□□ -2.39
SMC4-223ENST00000493695 TMEM229BQ8NBD8 167 aa0.1□□□□□ -2.39
SMC4-223ENST00000493695 THEM6Q8WUY1 208 aa0.1□□□□□ -2.39
SMC4-223ENST00000493695 C19orf12Q9NSK7 152 aa0.1□□□□□ -2.39
SMC4-223ENST00000493695 ATPIF1Q9UII2 106 aa0.1□□□□□ -2.39
SMC4-223ENST00000493695 C5orf58C9J3I9 102 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 RPS3P23396 243 aaKnown RBP eCLIP0.09□□□□□ -2.4
SMC4-223ENST00000493695 KDELR1P24390 212 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 POLR2HP52434 150 aaKnown RBP0.09□□□□□ -2.4
SMC4-223ENST00000493695 QRFPP83859 136 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 SPINK13Q1W4C9 94 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 HRCT1Q6UXD1 115 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 AP1S3Q96PC3 154 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 CCDC32Q9BV29 185 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 ANK2Q01484 3957 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 PIEZO1Q92508 2521 aa0.09□□□□□ -2.4
SMC4-223ENST00000493695 TRAV13-1A0A0B4J241 112 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 A0A1W2PPB8 328 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 A0A1W2PRS3 328 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 KIR3DP1A8MWS1 328 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 SRP9P49458 86 aaKnown RBP0.08□□□□□ -2.4
SMC4-223ENST00000493695 DNAJB13P59910 316 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 FXYD3Q14802 87 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 C3orf62Q6ZUJ4 267 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 TSKUQ8WUA8 353 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 LINC00208Q96KT6 92 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 FKBP11Q9NYL4 201 aa0.08□□□□□ -2.4
SMC4-223ENST00000493695 TANC2Q9HCD6 1990 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 LOC107986453A0A1B0GWG9 222 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 ARL5CA6NH57 179 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 E7EQ34 232 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 H3BMG7 143 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 FAM107AO95990 144 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 C5orf56Q8N8D9 126 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 NAT14Q8WUY8 206 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 LXNQ9BS40 222 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 CBLN4Q9NTU7 201 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 FER1L6Q2WGJ9 1857 aa0.07□□□□□ -2.4
SMC4-223ENST00000493695 LOC107984640A0A0U1RRK4 108 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 IFITM5A6NNB3 132 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 SLC25A4P12235 298 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 RPL7P18124 248 aaKnown RBP0.06□□□□□ -2.4
SMC4-223ENST00000493695 SNRPD3P62318 126 aaKnown RBP0.06□□□□□ -2.4
SMC4-223ENST00000493695 TEX29Q8N6K0 151 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 OR51A4Q8NGJ6 313 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 CENPHQ9H3R5 247 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 ATG2AQ2TAZ0 1938 aa0.06□□□□□ -2.4
SMC4-223ENST00000493695 TRPM7Q96QT4 1865 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 PBRM1Q86U86 1689 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 A2MP01023 1474 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.05□□□□□ -2.4
SMC4-223ENST00000493695 BBIP1A8MTZ0 92 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 PFDN1O60925 122 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 CRYGSP22914 178 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 TOMM20LQ6UXN7 152 aa0.05□□□□□ -2.4
SMC4-223ENST00000493695 MRPL36Q9P0J6 103 aaKnown RBP0.05□□□□□ -2.4
SMC4-223ENST00000493695 PTPRGP23470 1445 aa0.04□□□□□ -2.4
SMC4-223ENST00000493695 LRP1Q07954 4544 aaKnown RBP0.04□□□□□ -2.4
SMC4-223ENST00000493695 LOC101927531A0A1B0GV80 90 aa0.04□□□□□ -2.4
SMC4-223ENST00000493695 PRORSD1PA6NEY8 169 aa0.04□□□□□ -2.4
SMC4-223ENST00000493695 HIGD1CA8MV81 97 aa0.04□□□□□ -2.4
SMC4-223ENST00000493695 BLCAPP62952 87 aa0.04□□□□□ -2.4
SMC4-223ENST00000493695 SPINK6Q6UWN8 80 aa0.04□□□□□ -2.4
SMC4-223ENST00000493695 ZFYVE26Q68DK2 2539 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 A0A096LNT2 108 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 LOC107984156A0A0G2JMH3 177 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 ETV6P41212 452 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 ZNF56Q15929 161 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 LYPD5Q6UWN5 251 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 ARL17AQ8IVW1 177 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 OR5A2Q8NGI9 324 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 DMAC1Q96GE9 116 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 COMMD3Q9UBI1 195 aa0.03□□□□□ -2.4
SMC4-223ENST00000493695 TMEM30CPA0ZSE6 113 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 TMEM189A5PLL7 270 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 PGRMC1O00264 195 aaKnown RBP0.02□□□□□ -2.41
SMC4-223ENST00000493695 HBDP02042 147 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 S100A5P33763 92 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 RPL22P35268 128 aaKnown RBP0.02□□□□□ -2.41
SMC4-223ENST00000493695 GTF2A1P52655 376 aaPredicted RBP0.02□□□□□ -2.41
SMC4-223ENST00000493695 TFAMQ00059 246 aaKnown RBP0.02□□□□□ -2.41
SMC4-223ENST00000493695 RHOHQ15669 191 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 OR8J3Q8NGG0 315 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 KDM6BO15054 1643 aa0.02□□□□□ -2.41
SMC4-223ENST00000493695 KIDINS220Q9ULH0 1771 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 AFDNP55196 1824 aaKnown RBP0.01□□□□□ -2.41
SMC4-223ENST00000493695 TPRP12270 2363 aaKnown RBP0.01□□□□□ -2.41
SMC4-223ENST00000493695 TPST1O60507 370 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 EDF1O60869 148 aaKnown RBP0.01□□□□□ -2.41
SMC4-223ENST00000493695 FABP1P07148 127 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 Q5XG85 94 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 OR9Q1Q8NGQ5 310 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 TRAPPC2LQ9UL33 140 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 CPDO75976 1380 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 BLMP54132 1417 aaPredicted RBP0.01□□□□□ -2.41
SMC4-223ENST00000493695 CDK12Q9NYV4 1490 aaPredicted RBP0.01□□□□□ -2.41
SMC4-223ENST00000493695 DLEC1Q9Y238 1755 aa0.01□□□□□ -2.41
SMC4-223ENST00000493695 MAP2P11137 1827 aaKnown RBP0.01□□□□□ -2.41
SMC4-223ENST00000493695 A0A0G2JMM0 328 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms