RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CIARTQ8N365 385 aaPredicted RBP8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ATP5IP56385 69 aaPredicted RBP8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 BOD1L2Q8IYS8 172 aa8.55□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 CACNG8Q8WXS5 425 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TNRC6BQ9UPQ9 1833 aaKnown RBP8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 NCR2O95944 276 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TEX36Q5VZQ5 186 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 Q6AWC8 147 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ZNF747Q9BV97 191 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 EFNA4P52798 201 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 NDPQ00604 133 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C10orf126Q8N4M7 172 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GAGE12JA6NER3 117 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GAGE7O76087 117 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GAGE12FP0CL80 117 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GAGE12GP0CL81 117 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GAGE12IP0CL82 117 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 HERV-K104P63124 156 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GAGE4Q13068 117 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 SPANXN1Q5VSR9 72 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 FAM231DQ6ZW35 169 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 DEFB104AQ8WTQ1 72 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TMEM14BQ9NUH8 114 aa8.54□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 IGSF10Q6WRI0 2623 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 HELZ2Q9BYK8 2649 aaKnown RBP8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 PMS2P5A8MQ11 134 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TSPAN13O95857 204 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 ARMS2P0C7Q2 107 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 MORN5Q5VZ52 161 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 Q8N976 141 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TRBV20-1A0A075B6N2 111 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 FAM120AOSQ5T036 256 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C1orf122Q6ZSJ8 110 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C8orf86Q6ZUL3 223 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 WIPF2Q8TF74 440 aaPredicted RBP8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 GLMPQ8WWB7 406 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 C21orf62Q9NYP8 219 aa8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 MRPL36Q9P0J6 103 aaKnown RBP8.53□□□□□ -1.04
MSH5-SAPCD1-207ENST00000493662 TRGV3P03979 118 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 LGALS9BQ3B8N2 356 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 LGALS9CQ6DKI2 356 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 FAM90A9PA6NNJ1 464 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 H3BUX3 64 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRSS2P07478 247 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 ZFP36P26651 326 aaKnown RBP8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 MFAP4P55083 255 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 LINC01545Q5VT33 79 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SIVA1O15304 175 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 COX6CP09669 75 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IL17RELQ6ZVW7 336 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 AMN1Q8IY45 258 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PPDPFLQ8WWR9 84 aa8.52□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 RNF223E7ERA6 249 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 K7EMI3 77 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 EVI2AP22794 236 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 FXYD2P54710 66 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TMEM167AQ8TBQ9 72 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 RNF183Q96D59 192 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SPAG8Q99932 426 aaPredicted RBP8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IGKV1OR2-108A0A075B7D4 117 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 NPIPB6E9PJ23 425 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SMKR1H3BMG3 65 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TCRAP04437 139 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C15orf32Q32M92 178 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 HIST2H2BDQ6DRA6 164 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 JMJD8Q96S16 334 aa8.51□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 CHD6Q8TD26 2715 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TCTEX1D4Q5JR98 221 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPR1 153 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TCRBV4S1A1TA0A5B7 111 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 ZNF815PA8K554 130 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 FOXI2Q6ZQN5 318 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 ZNF833PQ6ZTB9 187 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 Q71RC1 249 aaPredicted RBP8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C20orf78Q9BR46 151 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SLC25A2Q9BXI2 301 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRX2 142 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PRSS29PA6NIE9 313 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 F5H697 171 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 MGPP08493 103 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 ITLN2Q8WWU7 325 aaPredicted RBP8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 NXT2Q9NPJ8 142 aaKnown RBP8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 NDUFA4L2Q9NRX3 87 aa8.5□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 USP24Q9UPU5 2620 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TRAV8-4A0A0B4J246 113 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C5orf64Q2M2E5 130 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 Q8TAT8 98 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SCGB3A1Q96QR1 104 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C1QTNF4Q9BXJ3 329 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 DKK2Q9UBU2 259 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 SMPXQ9UHP9 88 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 PSG8Q9UQ74 426 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 KLF12Q9Y4X4 402 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 UTP20O75691 2785 aaKnown RBP8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 IGHV4-61A0A0C4DH41 118 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 C12orf74Q32Q52 190 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 LYZL1Q6UWQ5 148 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 CEND1Q8N111 149 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 TTTY13Q9BZ97 58 aa8.49□□□□□ -1.05
MSH5-SAPCD1-207ENST00000493662 OTORQ9NRC9 128 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms