RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 LINC00477Q96M19 166 aa9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 LYRM2Q9NU23 88 aaPredicted RBP9.39□□□□□ -0.91
SQSTM1-208ENST00000485412 FAM240BA0A1B0GVZ2 78 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 SFTA3P0C7M3 94 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 GCSHP23434 173 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 SULT1A1P50225 295 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 RAB32Q13637 225 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 MIR17HGQ75NE6 70 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 WFDC10BQ8IUB3 73 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 ENKURQ8TC29 256 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 C2orf50Q96LR7 162 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 MARVELD1Q9BSK0 173 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 NUDT15Q9NV35 164 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 TIMM9Q9Y5J7 89 aa9.38□□□□□ -0.91
SQSTM1-208ENST00000485412 IGHV1OR15-1A0A075B7D0 117 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 TRAV9-2A0A087WT02 112 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 RGS13O14921 159 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 TCRBP04435 133 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 MUC21Q5SSG8 566 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 IBA57Q5T440 356 aaKnown RBP9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 PHYHIPLQ96FC7 376 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 NPCDR1Q9BY65 106 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 PRO0255Q9UI72 69 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 PRELID1Q9Y255 219 aa9.37□□□□□ -0.91
SQSTM1-208ENST00000485412 E5RGE8 158 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 OR10J4P0C629 311 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 S100A11P31949 105 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 PDE6HQ13956 83 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 C12orf45Q8N5I9 185 aaPredicted RBP9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 THAP6Q8TBB0 222 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 CHAC2Q8WUX2 184 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 ZNF479Q96JC4 524 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 GPN1Q9HCN4 374 aaPredicted RBP9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 ZNF492Q9P255 531 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 HHLA3Q9XRX5 114 aa9.36□□□□□ -0.91
SQSTM1-208ENST00000485412 NHLH2Q02577 135 aa9.35□□□□□ -0.91
SQSTM1-208ENST00000485412 FXYD5Q96DB9 178 aa9.35□□□□□ -0.91
SQSTM1-208ENST00000485412 MSRB1Q9NZV6 116 aa9.35□□□□□ -0.91
SQSTM1-208ENST00000485412 LY96Q9Y6Y9 160 aa9.35□□□□□ -0.91
SQSTM1-208ENST00000485412 K7EQD1 137 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 EIF3GO75821 320 aaKnown RBP eCLIP9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 NBEAP1P0C6P0 100 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 PVALBP20472 110 aaPredicted RBP9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 MRPL23Q16540 153 aaKnown RBP9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 TMEM78Q5T7P6 136 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 NEGR1Q7Z3B1 354 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 STX12Q86Y82 276 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 ARPC5LQ9BPX5 153 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 AAMDCQ9H7C9 122 aa9.34□□□□□ -0.91
SQSTM1-208ENST00000485412 LOC100131303A0A0U1RQF7 123 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 INMT-MINDY4F8WBC2 141 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 NMBP08949 121 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 ZNF138P52744 262 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 HBG1P69891 147 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 HBG2P69892 147 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 ZNF415Q09FC8 603 aa9.33□□□□□ -0.92
SQSTM1-208ENST00000485412 IGLV5-52A0A0A0MRZ9 124 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 TRGV4A0A0C4DH28 118 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 SIX6O95475 246 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 H2AFB2P0C5Z0 115 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 GYPEP15421 78 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 EVI2AP22794 236 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 OR5C1Q8NGR4 320 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 TMEM70Q9BUB7 260 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 MRPL32Q9BYC8 188 aaKnown RBP9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 OR51M1Q9H341 326 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 OR5AC2Q9NZP5 309 aa9.32□□□□□ -0.92
SQSTM1-208ENST00000485412 H0YIZ8 118 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 SLAQ13239 276 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 ZNF266Q14584 549 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 ATP6V1FQ16864 119 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 TMEM183BQ1AE95 376 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 TMEM183AQ8IXX5 376 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 FAM210AQ96ND0 272 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 PAXXQ9BUH6 204 aa9.31□□□□□ -0.92
SQSTM1-208ENST00000485412 K7EP13 123 aa9.3□□□□□ -0.92
SQSTM1-208ENST00000485412 SRIP30626 198 aa9.3□□□□□ -0.92
SQSTM1-208ENST00000485412 RANP62826 216 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-208ENST00000485412 OR10G4Q8NGN3 311 aa9.3□□□□□ -0.92
SQSTM1-208ENST00000485412 PSCAO43653 123 aa9.29□□□□□ -0.92
SQSTM1-208ENST00000485412 LRRC37A5PQ49AS3 106 aa9.29□□□□□ -0.92
SQSTM1-208ENST00000485412 RASL10AQ92737 203 aa9.29□□□□□ -0.92
SQSTM1-208ENST00000485412 WDR61Q9GZS3 305 aaKnown RBP9.29□□□□□ -0.92
SQSTM1-208ENST00000485412 NAGKQ9UJ70 344 aa9.29□□□□□ -0.92
SQSTM1-208ENST00000485412 IGHV3-16A0A0C4DH30 117 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 LRCOL1A6NCL2 159 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 GNRH2O43555 120 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 OR7C2O60412 319 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 CRYGDP07320 174 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 Q6AWC8 147 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 IQCF2Q8IXL9 164 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 NTN5Q8WTR8 489 aaPredicted RBP9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 PCNPQ8WW12 178 aaKnown RBP9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 SLC25A31Q9H0C2 315 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 ALG5Q9Y673 324 aa9.28□□□□□ -0.92
SQSTM1-208ENST00000485412 LRP1Q07954 4544 aaKnown RBP9.27□□□□□ -0.92
SQSTM1-208ENST00000485412 TRBV7-9A0A0J9YWB2 115 aa9.27□□□□□ -0.93
SQSTM1-208ENST00000485412 DIRC3C9JPN6 131 aa9.27□□□□□ -0.93
SQSTM1-208ENST00000485412 ATP6V1G1O75348 118 aa9.27□□□□□ -0.93
SQSTM1-208ENST00000485412 PLA2G1BP04054 148 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms