RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 RBMY1FQ15415 496 aaKnown RBP8.56□□□□□ -1.04
VPS52-213ENST00000461743 C9orf47Q6ZRZ4 202 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 C1orf158Q8N1D5 194 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 EXOC3-AS1Q8N2X6 119 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 RPP25LQ8N5L8 163 aaKnown RBP8.56□□□□□ -1.04
VPS52-213ENST00000461743 TMEM208Q9BTX3 173 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 ACTR3CQ9C0K3 210 aaPredicted RBP8.56□□□□□ -1.04
VPS52-213ENST00000461743 SH3BGRL3Q9H299 93 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 Q9H3A6 140 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 OTORQ9NRC9 128 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 DNAH1Q9P2D7 4330 aa8.56□□□□□ -1.04
VPS52-213ENST00000461743 SACSQ9NZJ4 4579 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 CXorf65A6NEN9 183 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 SEC11BP0C7V7 166 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 ARL14EPLP0DKL9 152 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 TAS2R60P59551 318 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 RRN3P1Q2M238 152 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 AKR1C8PQ5T2L2 129 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 TMEM78Q5T7P6 136 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 ZFAND6Q6FIF0 208 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 RAB24Q969Q5 203 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 LINC00477Q96M19 166 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 TMEM167BQ9NRX6 74 aa8.55□□□□□ -1.04
VPS52-213ENST00000461743 A0A087WWC5 75 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 CTXND1A0A1B0GTU2 59 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 UMAD1C9J7I0 102 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 C11orf94C9JXX5 98 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 H7BYZ3 331 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 CXorf1O96002 111 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 PKIAP61925 76 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 PYY3Q5JQD4 70 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 C14orf144Q96I85 54 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 C2orf88Q9BSF0 95 aa8.54□□□□□ -1.04
VPS52-213ENST00000461743 TRAV12-2A0A075B6T6 113 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 IGHV3OR16-12A0A075B7B8 117 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 LOC102723971A0A1B0GUV8 181 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 SERTM2A0A1B0GWG4 89 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 CT45A10P0DMU9 189 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 CRISP2P16562 243 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 GCHFRP30047 84 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 AKR1C3P42330 323 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 RANP62826 216 aaKnown RBP8.53□□□□□ -1.04
VPS52-213ENST00000461743 PMS2P11Q13670 270 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 CMTM2Q8TAZ6 248 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 ISOC2Q96AB3 205 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 FAM19A4Q96LR4 140 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 PLA2G2EQ9NZK7 142 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 KLK5Q9Y337 293 aaPredicted RBP8.53□□□□□ -1.04
VPS52-213ENST00000461743 LENEPQ9Y5L5 61 aa8.53□□□□□ -1.04
VPS52-213ENST00000461743 IGKV2-40A0A087WW87 121 aaPredicted RBP8.52□□□□□ -1.05
VPS52-213ENST00000461743 IFITM10A6NMD0 228 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 KLLNB2CW77 178 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 DIRC3C9JPN6 131 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 TSTD3H0UI37 97 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 DEFB4AO15263 64 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 IGKV2D-40P01614 121 aaPredicted RBP8.52□□□□□ -1.05
VPS52-213ENST00000461743 SPART-AS1P0CW21 52 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 GFI1BQ5VTD9 330 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 CEMP1Q6PRD7 247 aaPredicted RBP8.52□□□□□ -1.05
VPS52-213ENST00000461743 ZNF493Q6ZR52 646 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 PHLDA1Q8WV24 401 aaPredicted RBP8.52□□□□□ -1.05
VPS52-213ENST00000461743 C16orf74Q96GX8 76 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 NIPSNAP3BQ9BS92 247 aa8.52□□□□□ -1.05
VPS52-213ENST00000461743 LYRM9A8MSI8 78 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 HMGB3O15347 200 aaKnown RBP8.51□□□□□ -1.05
VPS52-213ENST00000461743 ZNF138P52744 262 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 TCTAP57738 103 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 NANOS2P60321 138 aaKnown RBP8.51□□□□□ -1.05
VPS52-213ENST00000461743 DPPA3Q6W0C5 159 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 C5orf17Q8NAS9 161 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 TMEM263Q8WUH6 116 aaKnown RBP8.51□□□□□ -1.05
VPS52-213ENST00000461743 PYGO2Q9BRQ0 406 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 AGPAT4-IT1Q9H0P7 198 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 ZNF492Q9P255 531 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 CELA1Q9UNI1 258 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 ARL2-SNX15V9GYD0 113 aa8.51□□□□□ -1.05
VPS52-213ENST00000461743 TRAV10A0A0B4J240 114 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 A0A1B0GV90 55 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 A0A1W2PRE2 83 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 C7orf71A4D174 169 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 FBLL1A6NHQ2 334 aaKnown RBP8.5□□□□□ -1.05
VPS52-213ENST00000461743 PPP1R2P9O14990 202 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 DDTP30046 118 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 RPS10P46783 165 aaKnown RBP8.5□□□□□ -1.05
VPS52-213ENST00000461743 SOHLH1Q5JUK2 328 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 HIST3H2BBQ8N257 126 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 LINC01587Q99440 93 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 VGLL1Q99990 258 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 LINC00467Q9BRT7 94 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 EIF5A2Q9GZV4 153 aaKnown RBP8.5□□□□□ -1.05
VPS52-213ENST00000461743 DKK2Q9UBU2 259 aa8.5□□□□□ -1.05
VPS52-213ENST00000461743 YTHDF2Q9Y5A9 579 aaKnown RBP8.5□□□□□ -1.05
VPS52-213ENST00000461743 MAP1LC3B2A6NCE7 125 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 PGPA6NDG6 321 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 K7EQM0 130 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 NDUFA6P56556 154 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 ERCC8Q13216 396 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 ZNF726P1Q15940 193 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 ZNF674Q2M3X9 581 aa8.49□□□□□ -1.05
VPS52-213ENST00000461743 SSX7Q7RTT5 188 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms