RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HMGA1P17096 107 aaKnown RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 PRLHP81277 87 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 LINC01620Q4KN68 170 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 Q8N9L7 120 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 TMEM222Q9H0R3 208 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 LAMTOR2Q9Y2Q5 125 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 EML5Q05BV3 1969 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 PLCH1Q4KWH8 1693 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 IGKV1D-17A0A075B6S4 117 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 TRAV10A0A0B4J240 114 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 ATP5G3P48201 142 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 ACANP16112 2415 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 ATG2AQ2TAZ0 1938 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 TIMM17BO60830 172 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 LY6HO94772 140 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 IGKV1-17P01599 117 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 CECR9P0C854 216 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 LYZL1Q6UWQ5 148 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 RPP25LQ8N5L8 163 aaKnown RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 NTN5Q8WTR8 489 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 SMAD5-AS1Q9Y6J3 95 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 IGKV1D-8A0A087WSZ0 117 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 RHOHQ15669 191 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 ZNF660Q6AZW8 331 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 Q6ZT83 130 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 SIRPDQ9H106 197 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 RAMP1O60894 148 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 DEFB112Q30KQ8 113 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 LINC01555Q8NAE3 123 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 ZNF319Q9P2F9 582 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 TRAV1-1A0A0B4J248 108 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 FAM223BA6NKX1 122 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 PRSS47A8MTI9 375 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 NDUFA1O15239 70 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 IGLV2-8P01709 118 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 SAA4P35542 130 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 FAM223AQ8IWN6 122 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 PNRC2Q9NPJ4 139 aaKnown RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 NUPR2A6NF83 97 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 NTN3O00634 580 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 ZNF672Q499Z4 452 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 DMKNQ6E0U4 476 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-202ENST00000375405 C5orf24Q7Z6I8 188 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 C5orf56Q8N8D9 126 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 KLK12Q9UKR0 248 aa3.75□□□□□ -1.81
SCN1A-202ENST00000375405 KIAA1549Q9HCM3 1950 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 PTPN13Q12923 2485 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-202ENST00000375405 IGKV2-29A2NJV5 120 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-202ENST00000375405 CTGFP29279 349 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 HERVK_113P63121 156 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 KIR3DS1Q14943 382 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 LINC00312Q9Y6C7 94 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 HCFC1P51610 2035 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 FRMPD3Q5JV73 1810 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 A0A1W2PPV9 198 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 C1QAP02745 245 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 MSMBP08118 114 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 OPRPNQ99935 248 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-202ENST00000375405 XAGE1AQ9HD64 81 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 TAF1LQ8IZX4 1826 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 CENPVL1A0A0U1RR11 272 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 G3V4G9 280 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 K7EM74 188 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 NANOS2P60321 138 aaKnown RBP3.74□□□□□ -1.81
SCN1A-202ENST00000375405 C5orf64Q2M2E5 130 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 C16orf54Q6UWD8 224 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 C11orf45Q8TAV5 145 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 IGHV2-26A0A0B4J1V2 119 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 TGFBR3LH3BV60 316 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 LECT2O14960 151 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 NANOS3P60323 173 aaKnown RBP3.74□□□□□ -1.81
SCN1A-202ENST00000375405 DEFB136Q30KP8 78 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 DEFB135Q30KP9 77 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 TM2D1Q9BX74 207 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 ADAMTS9Q9P2N4 1935 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 FAM236AA0A1B0GUQ0 79 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 FAM236BA0A1B0GV22 79 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 SMPXQ9UHP9 88 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 A6NDX4 124 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 TOGARAM1Q9Y4F4 1720 aa3.74□□□□□ -1.81
SCN1A-202ENST00000375405 A0A0G2JRQ6 117 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 IGLV2-11P01706 119 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 ATP5IP56385 69 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-202ENST00000375405 EIF4EBP2Q13542 120 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-202ENST00000375405 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-202ENST00000375405 COX14Q96I36 57 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 KAAG1Q9UBP8 84 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 V9GYY9 64 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 IGHV2OR16-5A0A0B4J2B6 119 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 A0A1W2PRE2 83 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 NDUFC2-KCTD14E9PQ53 114 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 BPY2O14599 106 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 GREM1O60565 184 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 VSIG8P0DPA2 414 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 CSRP2Q16527 193 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 FAM19A5Q7Z5A7 132 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-202ENST00000375405 AGMATQ9BSE5 352 aa3.73□□□□□ -1.81
SCN1A-202ENST00000375405 SPANXB1Q9NS25 103 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-202ENST00000375405 DOCK2Q92608 1830 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms