RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 NDUFA4L2Q9NRX3 87 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 A0A1W2PRX2 142 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 FCN3O75636 299 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 NPYP01303 97 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 SPATA25Q9BR10 227 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 SRRM4A7MD48 611 aaKnown RBP12.79□□□□□ -0.36
NPHP3-201ENST00000337331 C17orf58Q2M2W7 97 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 C15orf53Q8NAA6 179 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 PRSS22Q9GZN4 317 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 ZNF492Q9P255 531 aa12.79□□□□□ -0.36
NPHP3-201ENST00000337331 C15orf65H3BRN8 121 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 HLA-DRB4P13762 266 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 MRPL51Q4U2R6 128 aaKnown RBP12.78□□□□□ -0.36
NPHP3-201ENST00000337331 HLA-DRB4X5D2U9 266 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 TNFRSF6BO95407 300 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 LOXL1Q08397 574 aaPredicted RBP12.78□□□□□ -0.36
NPHP3-201ENST00000337331 LAGE3Q14657 143 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 TRGV2A0A075B6R0 118 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 PF4P02776 101 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 CNTFRP26992 372 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 TMEM101Q96IK0 257 aa12.78□□□□□ -0.36
NPHP3-201ENST00000337331 H3BUX3 64 aa12.77□□□□□ -0.36
NPHP3-201ENST00000337331 GATA4P43694 442 aa12.77□□□□□ -0.36
NPHP3-201ENST00000337331 WT1-ASQ06250 92 aa12.77□□□□□ -0.36
NPHP3-201ENST00000337331 C11orf44Q8N8P7 122 aa12.77□□□□□ -0.36
NPHP3-201ENST00000337331 SHANK2-AS3Q9BTD1 123 aa12.77□□□□□ -0.36
NPHP3-201ENST00000337331 DUSP14O95147 198 aaKnown RBP12.77□□□□□ -0.37
NPHP3-201ENST00000337331 NUP210Q8TEM1 1887 aaPredicted RBP12.77□□□□□ -0.37
NPHP3-201ENST00000337331 RPL32P62910 135 aaKnown RBP12.77□□□□□ -0.37
NPHP3-201ENST00000337331 EDA2RQ9HAV5 297 aa12.77□□□□□ -0.37
NPHP3-201ENST00000337331 COL4A4P53420 1690 aaPredicted RBP12.77□□□□□ -0.37
NPHP3-201ENST00000337331 MRPL23Q16540 153 aaKnown RBP12.76□□□□□ -0.37
NPHP3-201ENST00000337331 TEN1Q86WV5 123 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 M0R1W7 72 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 NTN5Q8WTR8 489 aaPredicted RBP12.76□□□□□ -0.37
NPHP3-201ENST00000337331 MYO9AB2RTY4 2548 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 KMT2EQ8IZD2 1858 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 SLC25A20O43772 301 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 C2orf82Q6UX34 121 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 C9orf139Q6ZV77 190 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 IGHV3-64A0A075B6Q5 118 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 PRR30Q53SZ7 412 aaPredicted RBP12.76□□□□□ -0.37
NPHP3-201ENST00000337331 TMEM190Q8WZ59 177 aa12.76□□□□□ -0.37
NPHP3-201ENST00000337331 A0A0U1RRA0 63 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 GATA3P23771 443 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 C14orf178Q8N769 122 aaPredicted RBP12.75□□□□□ -0.37
NPHP3-201ENST00000337331 OR11H6Q8NGC7 330 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 ADAMTS9Q9P2N4 1935 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 TRAV12-3A0A0B4J271 114 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 PLNP26678 52 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 SPANXA1Q9NS26 97 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 FXYD5Q96DB9 178 aa12.75□□□□□ -0.37
NPHP3-201ENST00000337331 EML6Q6ZMW3 1958 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 IGLV1-44P01699 117 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 LOXP28300 417 aaPredicted RBP12.74□□□□□ -0.37
NPHP3-201ENST00000337331 XGP55808 180 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 PEMTQ9UBM1 199 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 E9PLD3 99 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 MYMXA0A1B0GTQ4 84 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 SAA4P35542 130 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 BPESC1Q9GZL8 116 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 TPSG1Q9NRR2 321 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 PIEZO2Q9H5I5 2752 aa12.74□□□□□ -0.37
NPHP3-201ENST00000337331 CD28P10747 220 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 FGF6P10767 208 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 TAL2Q16559 108 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 A0A1B0GXF2 115 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 SLC25A16P16260 332 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 LINC01559Q495D7 138 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 Q6ZSR3 168 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 ERCC8Q13216 396 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 PDE6HQ13956 83 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 ZNF503Q96F45 646 aa12.73□□□□□ -0.37
NPHP3-201ENST00000337331 RNF138Q8WVD3 245 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 NUP210LQ5VU65 1888 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 CCDC168Q8NDH2 2452 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 IGLV3-9A0A075B6K5 115 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 DIAPH2-AS1Q14236 149 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 ZNF876PQ49A33 203 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 ZNF833PQ6ZTB9 187 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 RNF182Q8N6D2 247 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 Q8TCH9 128 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 MBD6Q96DN6 1003 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 TANC2Q9HCD6 1990 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 IGKV1OR2-108A0A075B7D4 117 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 DKK1O94907 266 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 NDUFV3P56181 108 aaKnown RBP12.72□□□□□ -0.37
NPHP3-201ENST00000337331 LINC00322Q6ZN03 302 aaPredicted RBP12.72□□□□□ -0.37
NPHP3-201ENST00000337331 STHQ8IWL8 128 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 DPH3P1Q9H4G8 78 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 HIGD1BQ9P298 99 aa12.72□□□□□ -0.37
NPHP3-201ENST00000337331 TRBV7-1A0A0A6YYK4 115 aa12.71□□□□□ -0.37
NPHP3-201ENST00000337331 URB1-AS1Q96HZ7 61 aa12.71□□□□□ -0.37
NPHP3-201ENST00000337331 LINC00477Q96M19 166 aa12.71□□□□□ -0.37
NPHP3-201ENST00000337331 TRBV19A0A075B6N1 114 aa12.7□□□□□ -0.38
NPHP3-201ENST00000337331 ANKRD29Q8N6D5 301 aa12.7□□□□□ -0.38
NPHP3-201ENST00000337331 FAM215AQ9Y5M1 114 aa12.7□□□□□ -0.38
NPHP3-201ENST00000337331 RHPN1-AS1Q9BWJ2 59 aa12.7□□□□□ -0.38
NPHP3-201ENST00000337331 OTOGLQ3ZCN5 2332 aa12.7□□□□□ -0.38
NPHP3-201ENST00000337331 TRGV11A0A075B6L2 103 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms