RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 ATG101Q9BSB4 218 aa4.69□□□□□ -1.66
CD44-204ENST00000279452 TREM1Q9NP99 234 aa4.69□□□□□ -1.66
CD44-204ENST00000279452 DKK2Q9UBU2 259 aa4.69□□□□□ -1.66
CD44-204ENST00000279452 EPDR1Q9UM22 224 aa4.69□□□□□ -1.66
CD44-204ENST00000279452 DNAH3Q8TD57 4116 aa4.69□□□□□ -1.66
CD44-204ENST00000279452 DEFB131BA0A096LNP1 70 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 TRAV34A0A0B4J273 112 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 FAM74A7A6NL05 159 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 KLLNB2CW77 178 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 PEX7O00628 323 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 PAGE4O60829 102 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 CRISP2P16562 243 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 AKR1C3P42330 323 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 ATP5G3P48201 142 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 RAB5CP51148 216 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 FLI1Q01543 452 aaPredicted RBP4.68□□□□□ -1.66
CD44-204ENST00000279452 C12orf74Q32Q52 190 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 FAM159AQ6UWV7 190 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 ZNF493Q6ZR52 646 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 EIF4E3Q8N5X7 224 aaKnown RBP4.68□□□□□ -1.66
CD44-204ENST00000279452 ZFAND2AQ8N6M9 145 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 ZNF680Q8NEM1 530 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 FAM19A4Q96LR4 140 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 NKX6-2Q9C056 277 aaPredicted RBP4.68□□□□□ -1.66
CD44-204ENST00000279452 NOP10Q9NPE3 64 aaKnown RBP4.68□□□□□ -1.66
CD44-204ENST00000279452 GNG13Q9P2W3 67 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 PSG8Q9UQ74 426 aa4.68□□□□□ -1.66
CD44-204ENST00000279452 TIMM8BQ9Y5J9 83 aaPredicted RBP4.68□□□□□ -1.66
CD44-204ENST00000279452 IGHV1OR15-1A0A075B7D0 117 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 TRAV21A0A0B4J279 112 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 GAGE12BA1L429 117 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 LYRM9A8MSI8 78 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 GAGE7O76087 117 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 LY6G6CO95867 125 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 IFNA1P01562 189 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 NMBP08949 121 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 GAGE12FP0CL80 117 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 GAGE12GP0CL81 117 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 GAGE12IP0CL82 117 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 ZNF415Q09FC8 603 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 ALKAL2Q6UX46 152 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 Q6ZQT7 251 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 ARL6IP6Q8N6S5 226 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 TMEM75Q8N9X5 138 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 SUN5Q8TC36 379 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 RNASE8Q8TDE3 154 aaKnown RBP4.67□□□□□ -1.66
CD44-204ENST00000279452 MBD3L1Q8WWY6 194 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 HIST1H2BAQ96A08 127 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 LINC00479Q96M42 142 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 C8orf49Q96NF6 230 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 GSN-AS1Q9NRJ2 163 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 LENEPQ9Y5L5 61 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 DNAH9Q9NYC9 4486 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 TGP01266 2768 aa4.67□□□□□ -1.66
CD44-204ENST00000279452 AGRNO00468 2067 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TRGV11A0A075B6L2 103 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TRGV2A0A075B6R0 118 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TRGV1A0A0A0MS02 117 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TRBV7-9A0A0J9YWB2 115 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 SCO2A0A1W2PP80 73 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 FBLL1A6NHQ2 334 aaKnown RBP4.66□□□□□ -1.66
CD44-204ENST00000279452 F5H768 121 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 J3QL48 77 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 ZNF324O75467 553 aaPredicted RBP4.66□□□□□ -1.66
CD44-204ENST00000279452 GCGP01275 180 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 SULT1A2P50226 295 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TMEM183BQ1AE95 376 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 SMUG1Q53HV7 270 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 SAPCD1Q5SSQ6 148 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 Q86TA4 180 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TMEM183AQ8IXX5 376 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 SDF2L1Q9HCN8 221 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 MANBALQ9NQG1 85 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 TP53TG3Q9ULZ0 132 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 ARL2-SNX15V9GYD0 113 aa4.66□□□□□ -1.66
CD44-204ENST00000279452 HUWE1Q7Z6Z7 4374 aaKnown RBP4.65□□□□□ -1.66
CD44-204ENST00000279452 IGHV4-4A0A075B6R2 117 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 LCE6AA0A183 80 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 PLAC8L1A1L4L8 177 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 ATP5G1P05496 136 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 CCL20P78556 96 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 OR5I1Q13606 314 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 ANXA2RQ3ZCQ2 193 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 LCE2AQ5TA79 106 aaPredicted RBP4.65□□□□□ -1.67
CD44-204ENST00000279452 Q6AWC8 147 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 NHLRC2Q8NBF2 726 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 TVP23CQ96ET8 276 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 FMC1Q96HJ9 113 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 TCEAL7Q9BRU2 100 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 NDUFAF3Q9BU61 184 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 MRPL16Q9NX20 251 aaKnown RBP4.65□□□□□ -1.67
CD44-204ENST00000279452 KLF12Q9Y4X4 402 aa4.65□□□□□ -1.67
CD44-204ENST00000279452 M0R036 132 aa4.64□□□□□ -1.67
CD44-204ENST00000279452 IGLV2-11P01706 119 aa4.64□□□□□ -1.67
CD44-204ENST00000279452 IGHV3-53P01767 116 aa4.64□□□□□ -1.67
CD44-204ENST00000279452 ORM1P02763 201 aa4.64□□□□□ -1.67
CD44-204ENST00000279452 TYMSP04818 313 aa4.64□□□□□ -1.67
CD44-204ENST00000279452 PFN1P07737 140 aaKnown RBP4.64□□□□□ -1.67
CD44-204ENST00000279452 SMCPP49901 116 aaPredicted RBP4.64□□□□□ -1.67
CD44-204ENST00000279452 TCL1AP56279 114 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms