RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TMEM208Q9BTX3 173 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 MAP1LC3BQ9GZQ8 125 aa12.91□□□□□ -0.34
CLN3-247ENST00000636351 PGPA6NDG6 321 aa12.9□□□□□ -0.34
CLN3-247ENST00000636351 NPIPB6E9PJ23 425 aa12.9□□□□□ -0.34
CLN3-247ENST00000636351 TSPOP30536 169 aa12.9□□□□□ -0.34
CLN3-247ENST00000636351 EIF5AL1Q6IS14 154 aaKnown RBP12.9□□□□□ -0.34
CLN3-247ENST00000636351 SLC51BQ86UW2 128 aa12.9□□□□□ -0.34
CLN3-247ENST00000636351 IGF2BP2-AS1Q96M15 143 aa12.9□□□□□ -0.34
CLN3-247ENST00000636351 FRAS1Q86XX4 4008 aa12.9□□□□□ -0.34
CLN3-247ENST00000636351 J3KRW8 73 aa12.89□□□□□ -0.35
CLN3-247ENST00000636351 LEPP41159 167 aa12.89□□□□□ -0.35
CLN3-247ENST00000636351 CDKN1BP46527 198 aa12.89□□□□□ -0.35
CLN3-247ENST00000636351 FHITP49789 147 aa12.89□□□□□ -0.35
CLN3-247ENST00000636351 NKX2-5P52952 324 aaPredicted RBP12.89□□□□□ -0.35
CLN3-247ENST00000636351 TMEM78Q5T7P6 136 aa12.89□□□□□ -0.35
CLN3-247ENST00000636351 RXFP4Q8TDU9 374 aa12.89□□□□□ -0.35
CLN3-247ENST00000636351 ZNF705EA8MWA4 302 aaPredicted RBP12.88□□□□□ -0.35
CLN3-247ENST00000636351 DEFB4AO15263 64 aa12.88□□□□□ -0.35
CLN3-247ENST00000636351 SLC25A5P05141 298 aaKnown RBP12.88□□□□□ -0.35
CLN3-247ENST00000636351 CT45A10P0DMU9 189 aa12.88□□□□□ -0.35
CLN3-247ENST00000636351 MIFP14174 115 aa12.88□□□□□ -0.35
CLN3-247ENST00000636351 CEMP1Q6PRD7 247 aaPredicted RBP12.88□□□□□ -0.35
CLN3-247ENST00000636351 X6R8D5 127 aa12.88□□□□□ -0.35
CLN3-247ENST00000636351 IGHV4-28A0A0C4DH34 117 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 UBE2G2P60604 165 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 DPPA3Q6W0C5 159 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 ZNF705AQ6ZN79 300 aaPredicted RBP12.87□□□□□ -0.35
CLN3-247ENST00000636351 Q8NAQ8 132 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 LINC00477Q96M19 166 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 ODF3Q96PU9 254 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 VGLL1Q99990 258 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 C11orf68Q9H3H3 251 aaKnown RBP12.87□□□□□ -0.35
CLN3-247ENST00000636351 TMPRSS5Q9H3S3 457 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 PLA2G2EQ9NZK7 142 aa12.87□□□□□ -0.35
CLN3-247ENST00000636351 A0A1B0GV50 99 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 DIRC3C9JPN6 131 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 CRXO43186 299 aaPredicted RBP12.86□□□□□ -0.35
CLN3-247ENST00000636351 HBE1P02100 147 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 GNG5P63218 68 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 GOLT1AQ6ZVE7 132 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 SUN5Q8TC36 379 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 SFT2D1Q8WV19 159 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 KRTAP17-1Q9BYP8 105 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 AGPAT4-IT1Q9H0P7 198 aa12.86□□□□□ -0.35
CLN3-247ENST00000636351 C9orf47Q6ZRZ4 202 aa12.85□□□□□ -0.35
CLN3-247ENST00000636351 C1orf158Q8N1D5 194 aa12.85□□□□□ -0.35
CLN3-247ENST00000636351 C5orf17Q8NAS9 161 aa12.85□□□□□ -0.35
CLN3-247ENST00000636351 Q8TAT8 98 aa12.85□□□□□ -0.35
CLN3-247ENST00000636351 KLK5Q9Y337 293 aaPredicted RBP12.85□□□□□ -0.35
CLN3-247ENST00000636351 KMT2AQ03164 3969 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 RBAKDNA6NC62 111 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 GGTLC3B5MD39 225 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 ZNF138P52744 262 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 KIR3DS1Q14943 382 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 GFI1BQ5VTD9 330 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 LINC01587Q99440 93 aa12.84□□□□□ -0.35
CLN3-247ENST00000636351 A0A1W2PRE2 83 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 IFNA7P01567 189 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 H2AFB1P0C5Y9 115 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 RAB5CP51148 216 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 SUMO1P63165 101 aaKnown RBP12.83□□□□□ -0.36
CLN3-247ENST00000636351 RRN3P1Q2M238 152 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 TMEM256Q8N2U0 113 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 NEU1Q99519 415 aa12.83□□□□□ -0.36
CLN3-247ENST00000636351 YTHDF2Q9Y5A9 579 aaKnown RBP12.83□□□□□ -0.36
CLN3-247ENST00000636351 SMIM9A6NGZ8 99 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 K7EQM0 130 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 RBMY1A1P0DJD3 496 aaKnown RBP12.82□□□□□ -0.36
CLN3-247ENST00000636351 RBMY1CP0DJD4 496 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 HTN1P15515 57 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 EMP1P54849 157 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 RBMY1FQ15415 496 aaKnown RBP12.82□□□□□ -0.36
CLN3-247ENST00000636351 MBD3L1Q8WWY6 194 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 NIPSNAP3BQ9BS92 247 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 ZNF492Q9P255 531 aa12.82□□□□□ -0.36
CLN3-247ENST00000636351 TRAV12-3A0A0B4J271 114 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 LOC102723971A0A1B0GUV8 181 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 SERTM2A0A1B0GWG4 89 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 C7orf71A4D174 169 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 ZNF705GA8MUZ8 300 aaPredicted RBP12.81□□□□□ -0.36
CLN3-247ENST00000636351 GPX1P07203 203 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 RNASE4P34096 147 aaKnown RBP12.81□□□□□ -0.36
CLN3-247ENST00000636351 SULT1A2P50226 295 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 BTN1A1Q13410 526 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 CST9LP1Q5W188 147 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 ARL6IP6Q8N6S5 226 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 C20orf144Q9BQM9 153 aa12.81□□□□□ -0.36
CLN3-247ENST00000636351 DNAH10Q8IVF4 4471 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 TRAV8-1A0A0A6YYK1 113 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 TMEM189A5PLL7 270 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 FAM74A7A6NL05 159 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 TCRAP04437 139 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 C11orf45Q8TAV5 145 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 PHLDA1Q8WV24 401 aaPredicted RBP12.8□□□□□ -0.36
CLN3-247ENST00000636351 FAM19A4Q96LR4 140 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 NKX6-2Q9C056 277 aaPredicted RBP12.8□□□□□ -0.36
CLN3-247ENST00000636351 EPDR1Q9UM22 224 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 BOLA1Q9Y3E2 137 aa12.8□□□□□ -0.36
CLN3-247ENST00000636351 HERC2O95714 4834 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 KLLNB2CW77 178 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms