RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ANK2Q01484 3957 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 TRAV8-1A0A0A6YYK1 113 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 OR11H12B2RN74 326 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 NPIPB6E9PJ23 425 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 DUSP14O95147 198 aaKnown RBP11.53□□□□□ -0.56
UPF1-206ENST00000598471 ZNF138P52744 262 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 C9orf47Q6ZRZ4 202 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 SVBPQ8N300 66 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 SGK494Q96LW2 274 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 IGF2BP2-AS1Q96M15 143 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 LINC00477Q96M19 166 aa11.53□□□□□ -0.56
UPF1-206ENST00000598471 TRBV20OR9-2A0A075B6H5 130 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 WIPF1O43516 503 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 LTAP01374 205 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 IGLV2-11P01706 119 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 BEAN1Q3B7T3 259 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 SAPCD1Q5SSQ6 148 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 VGLL1Q99990 258 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 FAM110AQ9BQ89 295 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 SAV1Q9H4B6 383 aaPredicted RBP11.52□□□□□ -0.57
UPF1-206ENST00000598471 SDF2L1Q9HCN8 221 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 BIN3Q9NQY0 253 aa11.52□□□□□ -0.57
UPF1-206ENST00000598471 A0A0J9YX75 114 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 F6UB75 175 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 M0R036 132 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 SNAPINO95295 136 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 PRB4P10163 310 aaPredicted RBP11.51□□□□□ -0.57
UPF1-206ENST00000598471 ERCC8Q13216 396 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 ADIRFQ15847 76 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 ODF3L2Q3SX64 289 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 GTSCR1Q86UQ5 136 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 AGPAT4-IT1Q9H0P7 198 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 PPP1R14DQ9NXH3 145 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 ZMAT5Q9UDW3 170 aaKnown RBP11.51□□□□□ -0.57
UPF1-206ENST00000598471 LENEPQ9Y5L5 61 aa11.51□□□□□ -0.57
UPF1-206ENST00000598471 MGST1P10620 155 aaKnown RBP11.5□□□□□ -0.57
UPF1-206ENST00000598471 RPL23P62829 140 aaKnown RBP11.5□□□□□ -0.57
UPF1-206ENST00000598471 LINC01551Q86U37 167 aa11.5□□□□□ -0.57
UPF1-206ENST00000598471 TMEM183AQ8IXX5 376 aa11.5□□□□□ -0.57
UPF1-206ENST00000598471 Q8TAT8 98 aa11.5□□□□□ -0.57
UPF1-206ENST00000598471 ZNF492Q9P255 531 aa11.5□□□□□ -0.57
UPF1-206ENST00000598471 TRBV7-9A0A0J9YWB2 115 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 PGPEP1LA6NFU8 196 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 ZNF705DP0CH99 300 aaPredicted RBP11.49□□□□□ -0.57
UPF1-206ENST00000598471 ZNF705BP0CI00 300 aaPredicted RBP11.49□□□□□ -0.57
UPF1-206ENST00000598471 CT45A10P0DMU9 189 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 HLA-DRB4P13762 266 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 DEFB1P60022 68 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 OCC1Q8TAD7 63 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 PRR25Q96S07 402 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 HLA-DRB4X5D2U9 266 aa11.49□□□□□ -0.57
UPF1-206ENST00000598471 B4DEV8 164 aa11.48□□□□□ -0.57
UPF1-206ENST00000598471 ACTL10Q5JWF8 245 aa11.48□□□□□ -0.57
UPF1-206ENST00000598471 NHLRC2Q8NBF2 726 aa11.48□□□□□ -0.57
UPF1-206ENST00000598471 CLRN3Q8NCR9 226 aa11.48□□□□□ -0.57
UPF1-206ENST00000598471 OR4B1Q8NGF8 309 aa11.48□□□□□ -0.57
UPF1-206ENST00000598471 ODF3Q96PU9 254 aa11.48□□□□□ -0.57
UPF1-206ENST00000598471 KNCNA6PVL3 124 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 IGLV2-8P01709 118 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 CD7P09564 240 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 TSPOP30536 169 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 LEPP41159 167 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 RHEBQ15382 184 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 SMUG1Q53HV7 270 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 GDF5OSQ5U4N7 250 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 APRG1Q8IVJ8 170 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 STHQ8IWL8 128 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 MLST8Q9BVC4 326 aa11.47□□□□□ -0.57
UPF1-206ENST00000598471 AURKAIP1Q9NWT8 199 aaPredicted RBP11.47□□□□□ -0.57
UPF1-206ENST00000598471 TRRAPQ9Y4A5 3859 aa11.46□□□□□ -0.57
UPF1-206ENST00000598471 H3BMM0 161 aa11.46□□□□□ -0.57
UPF1-206ENST00000598471 GCGP01275 180 aa11.46□□□□□ -0.57
UPF1-206ENST00000598471 PRR27Q6MZM9 219 aa11.46□□□□□ -0.57
UPF1-206ENST00000598471 COX8CQ7Z4L0 72 aa11.46□□□□□ -0.57
UPF1-206ENST00000598471 ISOC2Q96AB3 205 aa11.46□□□□□ -0.57
UPF1-206ENST00000598471 K7EN84 100 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 IGKV3-20P01619 116 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 MT-ND4LP03901 98 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 C15orf54Q8N8G6 183 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 DAZAP1Q96EP5 407 aaKnown RBP11.45□□□□□ -0.58
UPF1-206ENST00000598471 C8orf49Q96NF6 230 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 CLUHP3Q96NS8 147 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 ASCL2Q99929 193 aa11.45□□□□□ -0.58
UPF1-206ENST00000598471 A8MTW9 85 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 PPP1R2P9O14990 202 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 GPX1P07203 203 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 CRISP2P16562 243 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 ERVFC1-1P60608 527 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 OR5I1Q13606 314 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 ZNF124Q15973 351 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 OXLD1Q5BKU9 147 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 ZC2HC1AQ96GY0 325 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 SFRP2Q96HF1 295 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 FAM19A4Q96LR4 140 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 C19orf73Q9NVV2 129 aa11.44□□□□□ -0.58
UPF1-206ENST00000598471 IBA57Q5T440 356 aaKnown RBP11.43□□□□□ -0.58
UPF1-206ENST00000598471 FAM162BQ5T6X4 162 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 FAM231DQ6ZW35 169 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 OR10G8Q8NGN5 311 aa11.43□□□□□ -0.58
UPF1-206ENST00000598471 ANAPC16Q96DE5 110 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms