RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 EIF3GO75821 320 aaKnown RBP eCLIP16.93■□□□□ 0.3
SHMT1-206ENST00000579558 M6PRP20645 277 aa16.93■□□□□ 0.3
SHMT1-206ENST00000579558 C9orf47Q6ZRZ4 202 aa16.93■□□□□ 0.3
SHMT1-206ENST00000579558 TIMM8BQ9Y5J9 83 aaPredicted RBP16.93■□□□□ 0.3
SHMT1-206ENST00000579558 SLC25A5P05141 298 aaKnown RBP16.92■□□□□ 0.3
SHMT1-206ENST00000579558 RANP62826 216 aaKnown RBP16.92■□□□□ 0.3
SHMT1-206ENST00000579558 TMEM78Q5T7P6 136 aa16.92■□□□□ 0.3
SHMT1-206ENST00000579558 LYPD1Q8N2G4 141 aa16.92■□□□□ 0.3
SHMT1-206ENST00000579558 FAM19A4Q96LR4 140 aa16.92■□□□□ 0.3
SHMT1-206ENST00000579558 A0A1W2PPV4 95 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 C7orf71A4D174 169 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 CSN1S1P47710 185 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 RAB2AP61019 212 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 HSD17B11Q8NBQ5 300 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 VGLL1Q99990 258 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 Q9H3A6 140 aa16.91■□□□□ 0.3
SHMT1-206ENST00000579558 NOP10Q9NPE3 64 aaKnown RBP16.91■□□□□ 0.3
SHMT1-206ENST00000579558 KLLNB2CW77 178 aa16.9■□□□□ 0.3
SHMT1-206ENST00000579558 P0DMU3 169 aa16.9■□□□□ 0.3
SHMT1-206ENST00000579558 FAM231AP0DMU4 169 aa16.9■□□□□ 0.3
SHMT1-206ENST00000579558 FAM231CP0DMU5 169 aa16.9■□□□□ 0.3
SHMT1-206ENST00000579558 PYGO2Q9BRQ0 406 aa16.9■□□□□ 0.3
SHMT1-206ENST00000579558 CRISP2P16562 243 aa16.89■□□□□ 0.29
SHMT1-206ENST00000579558 BTN1A1Q13410 526 aa16.89■□□□□ 0.29
SHMT1-206ENST00000579558 TMEM88Q6PEY1 159 aa16.89■□□□□ 0.29
SHMT1-206ENST00000579558 INO80EQ8NBZ0 244 aaPredicted RBP16.89■□□□□ 0.29
SHMT1-206ENST00000579558 OR10G4Q8NGN3 311 aa16.89■□□□□ 0.29
SHMT1-206ENST00000579558 OR10G9Q8NGN4 311 aa16.89■□□□□ 0.29
SHMT1-206ENST00000579558 OR10G7Q8NGN6 311 aa16.89■□□□□ 0.29
SHMT1-206ENST00000579558 FXYD6-FXYD2A0A087WZ82 144 aa16.88■□□□□ 0.29
SHMT1-206ENST00000579558 GPX1P07203 203 aa16.88■□□□□ 0.29
SHMT1-206ENST00000579558 RNASE4P34096 147 aaKnown RBP16.88■□□□□ 0.29
SHMT1-206ENST00000579558 CD300CQ08708 224 aa16.88■□□□□ 0.29
SHMT1-206ENST00000579558 PQLC2Q6ZP29 291 aa16.88■□□□□ 0.29
SHMT1-206ENST00000579558 OR2T35Q8NGX2 323 aa16.88■□□□□ 0.29
SHMT1-206ENST00000579558 ZNF492Q9P255 531 aa16.88■□□□□ 0.29
SHMT1-206ENST00000579558 CBY3A6NI87 242 aa16.87■□□□□ 0.29
SHMT1-206ENST00000579558 ATP5G1P05496 136 aa16.87■□□□□ 0.29
SHMT1-206ENST00000579558 ATP5G3P48201 142 aa16.87■□□□□ 0.29
SHMT1-206ENST00000579558 OR2G3Q8NGZ4 309 aa16.87■□□□□ 0.29
SHMT1-206ENST00000579558 PSMG3Q9BT73 122 aaPredicted RBP16.87■□□□□ 0.29
SHMT1-206ENST00000579558 SNURFLB1AK76 121 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 F5H768 121 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 HMGB3O15347 200 aaKnown RBP16.86■□□□□ 0.29
SHMT1-206ENST00000579558 ZNF324O75467 553 aaPredicted RBP16.86■□□□□ 0.29
SHMT1-206ENST00000579558 NMBP08949 121 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 ATP6V0CP27449 155 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 ZNF138P52744 262 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 ZFAND2AQ8N6M9 145 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 POM121L12Q8N7R1 296 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 Q8TAT8 98 aa16.86■□□□□ 0.29
SHMT1-206ENST00000579558 RBAKDNA6NC62 111 aa16.85■□□□□ 0.29
SHMT1-206ENST00000579558 RNF222A6NCQ9 220 aa16.85■□□□□ 0.29
SHMT1-206ENST00000579558 CDC34P49427 236 aaPredicted RBP16.85■□□□□ 0.29
SHMT1-206ENST00000579558 RXFP4Q8TDU9 374 aa16.85■□□□□ 0.29
SHMT1-206ENST00000579558 HYLS1Q96M11 299 aa16.85■□□□□ 0.29
SHMT1-206ENST00000579558 OTORQ9NRC9 128 aa16.85■□□□□ 0.29
SHMT1-206ENST00000579558 TNFSF18Q9UNG2 199 aa16.85■□□□□ 0.29
SHMT1-206ENST00000579558 PRR9Q5T870 116 aa16.84■□□□□ 0.29
SHMT1-206ENST00000579558 UBE2DNLQ8IWF7 75 aa16.84■□□□□ 0.29
SHMT1-206ENST00000579558 PGPA6NDG6 321 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 DIRC3C9JPN6 131 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 FAM74A1Q5RGS3 127 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 C15orf53Q8NAA6 179 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 CMTM2Q8TAZ6 248 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 LINC00467Q9BRT7 94 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 SH3BGRL3Q9H299 93 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 DNAH6Q9C0G6 4158 aa16.83■□□□□ 0.28
SHMT1-206ENST00000579558 BORCS7-ASMTA0A0B4J1R7 106 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 TRBV7-9A0A0J9YWB2 115 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 MBP02144 154 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 ARL14EPLP0DKL9 152 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 SERF2P84101 59 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 RPL7L1Q6DKI1 246 aaKnown RBP16.82■□□□□ 0.28
SHMT1-206ENST00000579558 EIF4E3Q8N5X7 224 aaKnown RBP16.82■□□□□ 0.28
SHMT1-206ENST00000579558 LINC00612Q8N6U2 182 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 ZNF680Q8NEM1 530 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 RPH3ALQ9UNE2 315 aa16.82■□□□□ 0.28
SHMT1-206ENST00000579558 FRAS1Q86XX4 4008 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 GAGE12BA1L429 117 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 GAGE7O76087 117 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 GAGE12FP0CL80 117 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 GAGE12GP0CL81 117 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 GAGE12IP0CL82 117 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 ANXA2RQ3ZCQ2 193 aa16.81■□□□□ 0.28
SHMT1-206ENST00000579558 G3V3Q6 166 aa16.8■□□□□ 0.28
SHMT1-206ENST00000579558 RGS13O14921 159 aa16.8■□□□□ 0.28
SHMT1-206ENST00000579558 STAG3L2P0CL84 134 aa16.8■□□□□ 0.28
SHMT1-206ENST00000579558 STAG3L3P0CL85 134 aa16.8■□□□□ 0.28
SHMT1-206ENST00000579558 DAZ2Q13117 558 aaKnown RBP16.8■□□□□ 0.28
SHMT1-206ENST00000579558 RAB24Q969Q5 203 aa16.8■□□□□ 0.28
SHMT1-206ENST00000579558 GNPNAT1Q96EK6 184 aaPredicted RBP16.8■□□□□ 0.28
SHMT1-206ENST00000579558 GSN-AS1Q9NRJ2 163 aa16.8■□□□□ 0.28
SHMT1-206ENST00000579558 Q6ZQT7 251 aa16.79■□□□□ 0.28
SHMT1-206ENST00000579558 C11orf72Q8NBR9 251 aa16.79■□□□□ 0.28
SHMT1-206ENST00000579558 GOLT1AQ6ZVE7 132 aa16.78■□□□□ 0.28
SHMT1-206ENST00000579558 ACTR3CQ9C0K3 210 aaPredicted RBP16.78■□□□□ 0.28
SHMT1-206ENST00000579558 LENEPQ9Y5L5 61 aa16.78■□□□□ 0.28
SHMT1-206ENST00000579558 IGHV1OR15-1A0A075B7D0 117 aa16.77■□□□□ 0.28
SHMT1-206ENST00000579558 GCHFRP30047 84 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms