RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 Q9H3A6 140 aa10.35□□□□□ -0.75
CLN3-236ENST00000568558 NPIPB6E9PJ23 425 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 J3KRW8 73 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 CT45A10P0DMU9 189 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 BAXQ07812 192 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 ATP6V1FQ16864 119 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 SPATA12Q7Z6I5 190 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 THAP6Q8TBB0 222 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 ODF3Q96PU9 254 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 SLC25A31Q9H0C2 315 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 MBD2Q9UBB5 411 aa10.34□□□□□ -0.75
CLN3-236ENST00000568558 TRAV12-3A0A0B4J271 114 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 H3BNG1 76 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 LEPP41159 167 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 RAB31Q13636 194 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 GUK1Q16774 197 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 ESRGQ1W209 222 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 RGS21Q2M5E4 152 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 Q6ZRG5 221 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 PYGO2Q9BRQ0 406 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 MED28Q9H204 178 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 DNAJC4Q9NNZ3 241 aa10.33□□□□□ -0.76
CLN3-236ENST00000568558 TRAV5A0A0B4J249 113 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 RPL29P47914 159 aaKnown RBP10.32□□□□□ -0.76
CLN3-236ENST00000568558 DAZ2Q13117 558 aaKnown RBP10.32□□□□□ -0.76
CLN3-236ENST00000568558 Q6ZTI0 123 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 OR1L4Q8NGR5 311 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 CHAC2Q8WUX2 184 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 NPCDR1Q9BY65 106 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 TMPRSS5Q9H3S3 457 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 SLC39A9Q9NUM3 307 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 ZNF586Q9NXT0 402 aa10.32□□□□□ -0.76
CLN3-236ENST00000568558 MRPS16Q9Y3D3 137 aaKnown RBP10.32□□□□□ -0.76
CLN3-236ENST00000568558 A0A1W2PPQ1 181 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 ZNF253O75346 499 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 PET100P0DJ07 73 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 GCSAMLQ5JQS6 135 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 PFDN5Q99471 154 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 SMIM3Q9BZL3 60 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 HSPB11Q9Y547 144 aa10.31□□□□□ -0.76
CLN3-236ENST00000568558 SLC25A5P05141 298 aaKnown RBP10.3□□□□□ -0.76
CLN3-236ENST00000568558 BTF3P20290 206 aaKnown RBP10.3□□□□□ -0.76
CLN3-236ENST00000568558 RPL12P30050 165 aaKnown RBP10.3□□□□□ -0.76
CLN3-236ENST00000568558 Q5BKY6 102 aa10.3□□□□□ -0.76
CLN3-236ENST00000568558 Q8N1X5 172 aa10.3□□□□□ -0.76
CLN3-236ENST00000568558 MRPL53Q96EL3 112 aaKnown RBP10.3□□□□□ -0.76
CLN3-236ENST00000568558 WDR61Q9GZS3 305 aaKnown RBP10.3□□□□□ -0.76
CLN3-236ENST00000568558 WFDC1Q9HC57 220 aa10.3□□□□□ -0.76
CLN3-236ENST00000568558 C7orf71A4D174 169 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 M0R3E3 92 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 MPDU1O75352 247 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 KRTAP10-2P60368 255 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 C11orf72Q8NBR9 251 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 ZNF680Q8NEM1 530 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 VSIG2Q96IQ7 327 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 C18orf15Q96N68 181 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 ATP5SQ99766 215 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 GSN-AS1Q9NRJ2 163 aa10.29□□□□□ -0.76
CLN3-236ENST00000568558 TRBV19A0A075B6N1 114 aa10.28□□□□□ -0.76
CLN3-236ENST00000568558 A0A096LPF7 62 aa10.28□□□□□ -0.76
CLN3-236ENST00000568558 KLLNB2CW77 178 aa10.28□□□□□ -0.76
CLN3-236ENST00000568558 ERCC8Q13216 396 aa10.28□□□□□ -0.76
CLN3-236ENST00000568558 FAM19A4Q96LR4 140 aa10.28□□□□□ -0.76
CLN3-236ENST00000568558 LINC00467Q9BRT7 94 aa10.28□□□□□ -0.76
CLN3-236ENST00000568558 TRGV2A0A075B6R0 118 aa10.27□□□□□ -0.77
CLN3-236ENST00000568558 ZNF324O75467 553 aaPredicted RBP10.27□□□□□ -0.77
CLN3-236ENST00000568558 NDUFB4O95168 129 aa10.27□□□□□ -0.77
CLN3-236ENST00000568558 GIPP09681 153 aaPredicted RBP10.27□□□□□ -0.77
CLN3-236ENST00000568558 BTN1A1Q13410 526 aa10.27□□□□□ -0.77
CLN3-236ENST00000568558 EIF4E3Q8N5X7 224 aaKnown RBP10.27□□□□□ -0.77
CLN3-236ENST00000568558 TMEM14CQ9P0S9 112 aa10.27□□□□□ -0.77
CLN3-236ENST00000568558 TRGV1A0A0A0MS02 117 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 HIST1H1EP10412 219 aaKnown RBP10.26□□□□□ -0.77
CLN3-236ENST00000568558 LINC00315P59091 139 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 CD300CQ08708 224 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 PDE6HQ13956 83 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 ANXA2RQ3ZCQ2 193 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 LINC00477Q96M19 166 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 AGPAT4-IT1Q9H0P7 198 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 SCRT2Q9NQ03 307 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 FUT9Q9Y231 359 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 PRELID1Q9Y255 219 aa10.26□□□□□ -0.77
CLN3-236ENST00000568558 PYYP10082 97 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 CRISP2P16562 243 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 MIR17HGQ75NE6 70 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 FAM167A-AS1Q96KT0 104 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 SLC25A2Q9BXI2 301 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 KLF12Q9Y4X4 402 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 TIMM9Q9Y5J7 89 aa10.25□□□□□ -0.77
CLN3-236ENST00000568558 FAT1Q14517 4588 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 G3V3Q6 166 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 SIVA1O15304 175 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 SPINK4O60575 86 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 RNASE4P34096 147 aaKnown RBP10.24□□□□□ -0.77
CLN3-236ENST00000568558 TCL1AP56279 114 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 IBA57Q5T440 356 aaKnown RBP10.24□□□□□ -0.77
CLN3-236ENST00000568558 Q6ZRN7 208 aaPredicted RBP10.24□□□□□ -0.77
CLN3-236ENST00000568558 C9orf47Q6ZRZ4 202 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 EXOC3-AS1Q8N2X6 119 aa10.24□□□□□ -0.77
CLN3-236ENST00000568558 AQP10Q96PS8 301 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms