RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MRPL53Q96EL3 112 aaKnown RBP11.56□□□□□ -0.56
CLN3-211ENST00000564091 FAM19A4Q96LR4 140 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 C18orf15Q96N68 181 aa11.56□□□□□ -0.56
CLN3-211ENST00000564091 C5orf51A6NDU8 294 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 SIVA1O15304 175 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 PLA2G10O15496 165 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 SPINK4O60575 86 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 PYYP10082 97 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 VWC2Q2TAL6 325 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 ANXA2RQ3ZCQ2 193 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 EXOC3-AS1Q8N2X6 119 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 C12orf45Q8N5I9 185 aaPredicted RBP11.55□□□□□ -0.56
CLN3-211ENST00000564091 EIF4E3Q8N5X7 224 aaKnown RBP11.55□□□□□ -0.56
CLN3-211ENST00000564091 BLNKQ8WV28 456 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 LINC00477Q96M19 166 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 SEC22CQ9BRL7 303 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 TP53TG3Q9ULZ0 132 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 TIMM9Q9Y5J7 89 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 TNFRSF18Q9Y5U5 241 aa11.55□□□□□ -0.56
CLN3-211ENST00000564091 TRAV6A0A075B6T7 132 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 IGSF23A1L1A6 192 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 NXPH4O95158 308 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 HIST1H1EP10412 219 aaKnown RBP11.54□□□□□ -0.56
CLN3-211ENST00000564091 S100A10P60903 97 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 CNPY1Q3B7I2 92 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 GCSAMLQ5JQS6 135 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 Q6ZQT7 251 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 LINC00467Q9BRT7 94 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 TMEM14CQ9P0S9 112 aa11.54□□□□□ -0.56
CLN3-211ENST00000564091 PAX4O43316 350 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 MPDU1O75352 247 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 S100A11P31949 105 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 SULT1A1P50225 295 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 TCL1AP56279 114 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 PRR9Q5T870 116 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 TMEM252Q8N6L7 170 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 C2orf50Q96LR7 162 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 MRPL16Q9NX20 251 aaKnown RBP11.53□□□□□ -0.56
CLN3-211ENST00000564091 PRELID1Q9Y255 219 aa11.53□□□□□ -0.56
CLN3-211ENST00000564091 IGKV2-40A0A087WW87 121 aaPredicted RBP11.52□□□□□ -0.57
CLN3-211ENST00000564091 LYRM1O43325 122 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 IGKV2D-40P01614 121 aaPredicted RBP11.52□□□□□ -0.57
CLN3-211ENST00000564091 TCRBP04435 133 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 GPX1P07203 203 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 CRISP2P16562 243 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 PVALBP20472 110 aaPredicted RBP11.52□□□□□ -0.57
CLN3-211ENST00000564091 FGF7P21781 194 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 ICAM4Q14773 271 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 ST6GAL2Q96JF0 529 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 VGLL1Q99990 258 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 LYRM2Q9NU23 88 aaPredicted RBP11.52□□□□□ -0.57
CLN3-211ENST00000564091 PGPEP1Q9NXJ5 209 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 ICOSQ9Y6W8 199 aa11.52□□□□□ -0.57
CLN3-211ENST00000564091 RGS13O14921 159 aa11.51□□□□□ -0.57
CLN3-211ENST00000564091 PDE6HQ13956 83 aa11.51□□□□□ -0.57
CLN3-211ENST00000564091 FAM122CQ6P4D5 195 aa11.51□□□□□ -0.57
CLN3-211ENST00000564091 C9orf47Q6ZRZ4 202 aa11.51□□□□□ -0.57
CLN3-211ENST00000564091 ZFAND2AQ8N6M9 145 aa11.51□□□□□ -0.57
CLN3-211ENST00000564091 CHAC2Q8WUX2 184 aa11.51□□□□□ -0.57
CLN3-211ENST00000564091 MYCBP2O75592 4640 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 IGHV1OR15-1A0A075B7D0 117 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 EPM2AB3EWF7 344 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 PRAF2O60831 178 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 IL15RAQ13261 267 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 RAB32Q13637 225 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 IBA57Q5T440 356 aaKnown RBP11.5□□□□□ -0.57
CLN3-211ENST00000564091 LYPD5Q6UWN5 251 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 STX12Q86Y82 276 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 C8orf49Q96NF6 230 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 SLC25A2Q9BXI2 301 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 AAMDCQ9H7C9 122 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 NUDT15Q9NV35 164 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 PRO0255Q9UI72 69 aa11.5□□□□□ -0.57
CLN3-211ENST00000564091 CRYBA4P53673 196 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 HBG1P69891 147 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 HBG2P69892 147 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 FHL2Q14192 279 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 TMEM78Q5T7P6 136 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 MIR17HGQ75NE6 70 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 ARPC5LQ9BPX5 153 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 GPN1Q9HCN4 374 aaPredicted RBP11.49□□□□□ -0.57
CLN3-211ENST00000564091 ZNF492Q9P255 531 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 HHLA3Q9XRX5 114 aa11.49□□□□□ -0.57
CLN3-211ENST00000564091 VPS13BQ7Z7G8 4022 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 EREGO14944 169 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 NMBP08949 121 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 XGP55808 180 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 ERVFC1-1P60608 527 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 ATP6V1FQ16864 119 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 THAP6Q8TBB0 222 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 FAM167A-AS1Q96KT0 104 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 NPCDR1Q9BY65 106 aa11.48□□□□□ -0.57
CLN3-211ENST00000564091 NBEAP1P0C6P0 100 aa11.47□□□□□ -0.57
CLN3-211ENST00000564091 DNAH10OSP0CZ25 163 aa11.47□□□□□ -0.57
CLN3-211ENST00000564091 MRPL23Q16540 153 aaKnown RBP11.47□□□□□ -0.57
CLN3-211ENST00000564091 LYPD1Q8N2G4 141 aa11.47□□□□□ -0.57
CLN3-211ENST00000564091 Q8TAT8 98 aa11.47□□□□□ -0.57
CLN3-211ENST00000564091 PTTG2Q9NZH5 202 aa11.47□□□□□ -0.57
CLN3-211ENST00000564091 A0A087WTM6 91 aa11.46□□□□□ -0.57
CLN3-211ENST00000564091 E5RGE8 158 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 269.1 ms