RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PRR25Q96S07 402 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 ATP6V0BQ99437 205 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 DKK2Q9UBU2 259 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 F8W735 103 aaPredicted RBP10.31□□□□□ -0.76
CLN3-210ENST00000563874 H3BUT2 72 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 HBDP02042 147 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 JMJD8Q96S16 334 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 DPM3Q9P2X0 92 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 SAP30O75446 220 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 GRNP28799 593 aaKnown RBP10.31□□□□□ -0.76
CLN3-210ENST00000563874 PPIFP30405 207 aaKnown RBP10.31□□□□□ -0.76
CLN3-210ENST00000563874 IFI27L1Q96BM0 104 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 U3KQK5 164 aa10.31□□□□□ -0.76
CLN3-210ENST00000563874 MFAP4P55083 255 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 SEC11AP67812 179 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 TCF15Q12870 199 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 LGALS9BQ3B8N2 356 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 ZNF672Q499Z4 452 aaPredicted RBP10.3□□□□□ -0.76
CLN3-210ENST00000563874 LGALS9CQ6DKI2 356 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 FER1L6-AS1Q8NA97 138 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 AP1S3Q96PC3 154 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 RNF5Q99942 180 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 SPTBN1Q01082 2364 aaKnown RBP10.3□□□□□ -0.76
CLN3-210ENST00000563874 ORM1P02763 201 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 HERV-K104P63124 156 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 BOD1L2Q8IYS8 172 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 CFHR4Q92496 578 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 TTTY13Q9BZ97 58 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 RAB1BQ9H0U4 201 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 C21orf62Q9NYP8 219 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 A1L4Q6 167 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 SMAD7O15105 426 aaKnown RBP10.3□□□□□ -0.76
CLN3-210ENST00000563874 PDE6HQ13956 83 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 C5orf64Q2M2E5 130 aa10.3□□□□□ -0.76
CLN3-210ENST00000563874 SRSF8Q9BRL6 282 aaKnown RBP10.3□□□□□ -0.76
CLN3-210ENST00000563874 IGLV11-55A0A075B6I3 123 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 NDUFS7O75251 213 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 EVI2AP22794 236 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 KIR3DS1Q14943 382 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 A4D1N5 150 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 PAX8Q06710 450 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 ERCC8Q13216 396 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 SPXQ9BT56 116 aa10.29□□□□□ -0.76
CLN3-210ENST00000563874 FAM90A27PA6NNH2 459 aa10.28□□□□□ -0.76
CLN3-210ENST00000563874 SAMD13Q5VXD3 122 aa10.28□□□□□ -0.76
CLN3-210ENST00000563874 ARPC1AQ92747 370 aa10.28□□□□□ -0.76
CLN3-210ENST00000563874 SMAD5-AS1Q9Y6J3 95 aa10.28□□□□□ -0.76
CLN3-210ENST00000563874 BRI3O95415 125 aa10.28□□□□□ -0.76
CLN3-210ENST00000563874 GATA1P15976 413 aaPredicted RBP10.28□□□□□ -0.76
CLN3-210ENST00000563874 RPS20P60866 119 aaKnown RBP10.28□□□□□ -0.76
CLN3-210ENST00000563874 ZNF575Q86XF7 245 aa10.28□□□□□ -0.76
CLN3-210ENST00000563874 A6NDN8 102 aa10.27□□□□□ -0.76
CLN3-210ENST00000563874 IGHG4P01861 327 aa10.27□□□□□ -0.76
CLN3-210ENST00000563874 RPL7P18124 248 aaKnown RBP10.27□□□□□ -0.76
CLN3-210ENST00000563874 DYNAPQ8N1N2 210 aa10.27□□□□□ -0.76
CLN3-210ENST00000563874 MEGF9Q9H1U4 602 aa10.27□□□□□ -0.76
CLN3-210ENST00000563874 AKAP6Q13023 2319 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 IGHV3OR16-13A0A075B7E8 117 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 IGHV3-74A0A0B4J1X5 117 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 IGHV3-66A0A0C4DH42 116 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 OR1N2Q8NGR9 330 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 C9orf118A6NHY6 69 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 PRAC2D3DTV9 90 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 K7ERU9 68 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 NDUFA3O95167 84 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 ADAMTSL5Q6ZMM2 481 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 RNF182Q8N6D2 247 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 NPBQ8NG41 125 aa10.27□□□□□ -0.77
CLN3-210ENST00000563874 HRNRQ86YZ3 2850 aaPredicted RBP10.26□□□□□ -0.77
CLN3-210ENST00000563874 A0A0G2JLM5 398 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 CTSGP08311 255 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 LEPP41159 167 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 ATRXP46100 2492 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 H3BRM9 83 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 HSD52Q0P140 79 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 DPF1Q92782 380 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 RNF185Q96GF1 192 aa10.26□□□□□ -0.77
CLN3-210ENST00000563874 IGKV2D-26A0A0A0MRZ7 120 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 IGLC6P0CF74 106 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 UFSP1Q6NVU6 142 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 ZNF562Q6V9R5 426 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 GTF2H5Q6ZYL4 71 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 LY6G5BQ8NDX9 201 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 OR11H6Q8NGC7 330 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 PTPRQQ9UMZ3 2332 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 PRSS1P07477 247 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 RAB9AP51151 201 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 OR9G4Q8NGQ1 327 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 MAP1LC3AQ9H492 121 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 SMPXQ9UHP9 88 aa10.25□□□□□ -0.77
CLN3-210ENST00000563874 PGPEP1Q9NXJ5 209 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 IGHV3-49A0A0A0MS15 119 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 K7EMI3 77 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 GCSHP23434 173 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 ID1P41134 155 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 IL17RELQ6ZVW7 336 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 OR2K2Q8NGT1 345 aa10.24□□□□□ -0.77
CLN3-210ENST00000563874 TNFRSF6BO95407 300 aa10.23□□□□□ -0.77
CLN3-210ENST00000563874 TTC9CQ8N5M4 171 aa10.23□□□□□ -0.77
CLN3-210ENST00000563874 K7EP34 96 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms