RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 POM121L12Q8N7R1 296 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 C20orf144Q9BQM9 153 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 NDUFAF3Q9BU61 184 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 MRPL32Q9BYC8 188 aaKnown RBP7.47□□□□□ -1.21
CD44-227ENST00000528086 NOP10Q9NPE3 64 aaKnown RBP7.47□□□□□ -1.21
CD44-227ENST00000528086 TIMM9Q9Y5J7 89 aa7.47□□□□□ -1.21
CD44-227ENST00000528086 RNF222A6NCQ9 220 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 Q8TAT8 98 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 TMEM263Q8WUH6 116 aaKnown RBP7.46□□□□□ -1.22
CD44-227ENST00000528086 C16orf74Q96GX8 76 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 AQP10Q96PS8 301 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 ZNF492Q9P255 531 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 TP53TG3Q9ULZ0 132 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 PRELID1Q9Y255 219 aa7.46□□□□□ -1.22
CD44-227ENST00000528086 TEX48A0A1B0GUV7 120 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 RTL8CO15255 209 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 PET100P0DJ07 73 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 HOXA5P20719 270 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 LEPP41159 167 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 RANP62826 216 aaKnown RBP7.45□□□□□ -1.22
CD44-227ENST00000528086 ZNF493Q6ZR52 646 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 Q6ZR54 194 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 SSX7Q7RTT5 188 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 FAM210BQ96KR6 192 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 LINC00477Q96M19 166 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 MED28Q9H204 178 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 SH3BGRL3Q9H299 93 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 Q9H3A6 140 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 PPP1R14DQ9NXH3 145 aa7.45□□□□□ -1.22
CD44-227ENST00000528086 TIMM8BQ9Y5J9 83 aaPredicted RBP7.45□□□□□ -1.22
CD44-227ENST00000528086 KIAA1109Q2LD37 5005 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 A0A1B0GVY2 172 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 C7orf71A4D174 169 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 CBY3A6NI87 242 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 C17orf112F2Z3M2 114 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 HMGB3O15347 200 aaKnown RBP7.44□□□□□ -1.22
CD44-227ENST00000528086 OR7C2O60412 319 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 SLC25A5P05141 298 aaKnown RBP7.44□□□□□ -1.22
CD44-227ENST00000528086 GIPP09681 153 aaPredicted RBP7.44□□□□□ -1.22
CD44-227ENST00000528086 ATP6V0CP27449 155 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 Q6ZTI0 123 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 TVP23CQ96ET8 276 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 LINC00467Q9BRT7 94 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 KCNIP2Q9NS61 270 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 HERC2O95714 4834 aa7.44□□□□□ -1.22
CD44-227ENST00000528086 DIRC3C9JPN6 131 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 IFNA5P01569 189 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 M6PRP20645 277 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 RNASE4P34096 147 aaKnown RBP7.43□□□□□ -1.22
CD44-227ENST00000528086 UBE2L3P68036 154 aaKnown RBP7.43□□□□□ -1.22
CD44-227ENST00000528086 DAZ2Q13117 558 aaKnown RBP7.43□□□□□ -1.22
CD44-227ENST00000528086 OR2G3Q8NGZ4 309 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 SUN5Q8TC36 379 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 SCGB1C1Q8TD33 95 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 PYGO2Q9BRQ0 406 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 GSN-AS1Q9NRJ2 163 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 KLF12Q9Y4X4 402 aa7.43□□□□□ -1.22
CD44-227ENST00000528086 F5H768 121 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 M0R2N4 97 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 NMBP08949 121 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 P0DMU3 169 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 FAM231AP0DMU4 169 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 FAM231CP0DMU5 169 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 ZNF138P52744 262 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 ZNF726P1Q15940 193 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 ANXA2RQ3ZCQ2 193 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 RPL7L1Q6DKI1 246 aaKnown RBP7.42□□□□□ -1.22
CD44-227ENST00000528086 LYPD1Q8N2G4 141 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 HSD17B11Q8NBQ5 300 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 AAMDCQ9H7C9 122 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 CYTL1Q9NRR1 136 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 TNFSF18Q9UNG2 199 aa7.42□□□□□ -1.22
CD44-227ENST00000528086 IGLV2-18A0A075B6J9 118 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 TRAV8-1A0A0A6YYK1 113 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 GAGE12BA1L429 117 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 RBAKDNA6NC62 111 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 PGPA6NDG6 321 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 SMLR1H3BR10 107 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 GAGE7O76087 117 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 ATP5G1P05496 136 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 GAGE12FP0CL80 117 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 GAGE12GP0CL81 117 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 GAGE12IP0CL82 117 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 STAG3L2P0CL84 134 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 STAG3L3P0CL85 134 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 ARL14EPLP0DKL9 152 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 ATP5G3P48201 142 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 GNG5P63218 68 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 ZNF266Q14584 549 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 ACOT6Q3I5F7 207 aaPredicted RBP7.41□□□□□ -1.22
CD44-227ENST00000528086 KHDC3LQ587J8 217 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 OR10G4Q8NGN3 311 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 OR10G9Q8NGN4 311 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 OR10G7Q8NGN6 311 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 VSIG2Q96IQ7 327 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 TMPRSS5Q9H3S3 457 aa7.41□□□□□ -1.22
CD44-227ENST00000528086 TRBV7-9A0A0J9YWB2 115 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 SPINK4O60575 86 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 IGLV2-11P01706 119 aa7.4□□□□□ -1.22
CD44-227ENST00000528086 GPX1P07203 203 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms