RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PRSS2P07478 247 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 ASAH2BP0C7U1 165 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 C3orf79P0CE67 100 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 CCL4P13236 92 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF32P17041 273 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 KISS1Q15726 138 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 KRTAP19-4Q3LI73 84 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 C9orf57Q5W0N0 161 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 PATE2Q6UY27 113 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 SOSTDC1Q6X4U4 206 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 C2orf91Q6ZV80 131 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 TMEM252Q8N6L7 170 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 CSNK1G2-AS1Q8NCQ2 148 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 MANBALQ9NQG1 85 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 CELA1Q9UNI1 258 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 LY96Q9Y6Y9 160 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 LRP4O75096 1905 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 PLXNA1Q9UIW2 1896 aa3.06□□□□□ -1.92
BRCA1-220ENST00000492859 MROH2BQ7Z745 1585 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 TRPM2O94759 1503 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 KCPQ6ZWJ8 1503 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 TRIP12Q14669 1992 aaPredicted RBP3.05□□□□□ -1.92
BRCA1-220ENST00000492859 IGLV5-37A0A075B6J1 123 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 TRAV14DV4A0A0A6YYC5 116 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 IGHV7-81A0A0B4J1V7 117 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 IGKV1-6A0A0C4DH72 117 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 A0A1W2PQD3 144 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 IGKV1-39P01597 117 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 IGKV1D-39P04432 117 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 CD28P10747 220 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF20P17024 532 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 EFNA4P52798 201 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 HERVK_113P61574 105 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 Q6ZRP5 223 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 PDPNQ86YL7 162 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 SPTSSAQ969W0 71 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 PRAC1Q96KF2 57 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 LINC01600Q96MT4 127 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 CST11Q9H112 138 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 NXT2Q9NPJ8 142 aaKnown RBP3.05□□□□□ -1.92
BRCA1-220ENST00000492859 OSTCQ9NRP0 149 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 TAS2R4Q9NYW5 299 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 SLX4Q8IY92 1834 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 PCNX3Q9H6A9 2034 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 KIAA1549Q9HCM3 1950 aa3.05□□□□□ -1.92
BRCA1-220ENST00000492859 AGRNO00468 2067 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 TDRD6O60522 2096 aaKnown RBP3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ALS2Q96Q42 1657 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 IGLV3-9A0A075B6K5 115 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 E7EQL1 145 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 LEPROTO15243 131 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 LY6G6DO95868 133 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 BGLAPP02818 100 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 COX8AP10176 69 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 NANOS3P60323 173 aaKnown RBP3.04□□□□□ -1.92
BRCA1-220ENST00000492859 UBE2G1P62253 170 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 TFF2Q03403 129 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 EGFEM1PQ0D2K5 195 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 C12orf73Q69YU5 71 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 RPL7L1Q6DKI1 246 aaKnown RBP3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ZFP2Q6ZN57 461 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF497Q6ZNH5 498 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ATP11AUNQ6ZP68 121 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 C16orf47Q6ZP98 133 aaPredicted RBP3.04□□□□□ -1.92
BRCA1-220ENST00000492859 CYB561D1Q8N8Q1 229 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ATXN7L3BQ96GX2 97 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 TRGV9Q99603 122 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 LINC00474Q9P2X8 69 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 TP53TG3Q9ULZ0 132 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 CSAG2Q9Y5P2 127 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 TUBGCP6Q96RT7 1819 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 CDC42BPGQ6DT37 1551 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 NINQ8N4C6 2090 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 PIKFYVEQ9Y2I7 2098 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 PLCH1Q4KWH8 1693 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ALKQ9UM73 1620 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 A0A0D9SFI3 127 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 KRTAP16-1A8MUX0 517 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 SERF1AO75920 110 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 PTHLHP12272 177 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 SLC25A16P16260 332 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 KRTAP10-2P60368 255 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 RBM3P98179 157 aaKnown RBP3.04□□□□□ -1.92
BRCA1-220ENST00000492859 RPL18Q07020 188 aaKnown RBP3.04□□□□□ -1.92
BRCA1-220ENST00000492859 IL17AQ16552 155 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 FAM104BQ5XKR9 115 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 NOXRED1Q6NXP6 359 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 PRSS3P2Q8NHM4 247 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 CLEC2BQ92478 149 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 NABP2Q9BQ15 211 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 KRTAP9-3Q9BYQ3 159 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 COL18A1P39060 1754 aa3.04□□□□□ -1.92
BRCA1-220ENST00000492859 ZNF646O15015 1829 aaPredicted RBP3.03□□□□□ -1.92
BRCA1-220ENST00000492859 GTF3C1Q12789 2109 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 EIF2AK4Q9P2K8 1649 aaKnown RBP3.03□□□□□ -1.92
BRCA1-220ENST00000492859 RPL37AP8A6NKH3 93 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 C19orf84I3L1E1 186 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 BMPR1BO00238 502 aa3.03□□□□□ -1.92
BRCA1-220ENST00000492859 MDKP21741 143 aaPredicted RBP3.03□□□□□ -1.92
BRCA1-220ENST00000492859 COX7A1P24310 79 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms