RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MGST2Q99735 147 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 SLC50A1Q9BRV3 221 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 NIPSNAP3BQ9BS92 247 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 TMEM208Q9BTX3 173 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 NDUFAF3Q9BU61 184 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 C1orf43Q9BWL3 253 aa4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 LYRM2Q9NU23 88 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-213ENST00000476903 LOC105371267A0A1B0GV96 52 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 FAM24AA6NFZ4 105 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 M0R2Z0 102 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 MRPS12O15235 138 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 CST7O76096 145 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 S100A11P31949 105 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 SULT1A1P50225 295 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 RHOBP62745 196 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 HIST1H1AQ02539 215 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 RAB32Q13637 225 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 PSG3Q16557 428 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 VWC2Q2TAL6 325 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 C10orf113Q5VZT2 155 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 CST9LP1Q5W188 147 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 LCN15Q6UWW0 184 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 Q6ZRG5 221 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 NRARPQ7Z6K4 114 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 BPIFA4PQ86YQ2 179 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 BAP18Q8IXM2 172 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 OR8A1Q8NGG7 326 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 FAM210BQ96KR6 192 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 C11orf1Q9H5F2 150 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 GPN1Q9HCN4 374 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 DNAJC4Q9NNZ3 241 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 UQCC1Q9NVA1 299 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 WDR83OSQ9Y284 106 aa4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 YTHDF2Q9Y5A9 579 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-213ENST00000476903 FRAS1Q86XX4 4008 aa4.84□□□□□ -1.64
CCDC88A-213ENST00000476903 DNAH6Q9C0G6 4158 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 TRAV12-2A0A075B6T6 113 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 UBE2L5PA0A1B0GUS4 154 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 CRXO43186 299 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 UPK1BO75841 260 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 SNAPINO95295 136 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 P0DMU3 169 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 FAM231AP0DMU4 169 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 FAM231CP0DMU5 169 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 GCSHP23434 173 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 DAD1P61803 113 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 BAXQ07812 192 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 IL15RAQ13261 267 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 OXA1LQ15070 435 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 FAM122CQ6P4D5 195 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 TMEM256Q8N2U0 113 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 TMEM252Q8N6L7 170 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 OR1L4Q8NGR5 311 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 TMEM37Q8WXS4 190 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 RPUSD4Q96CM3 377 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 PFDN5Q99471 154 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 ZNF331Q9NQX6 463 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 PXMP4Q9Y6I8 212 aa4.83□□□□□ -1.64
CCDC88A-213ENST00000476903 VPS13DQ5THJ4 4388 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 IGSF23A1L1A6 192 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 LYRM9A8MSI8 78 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 ZNF705GA8MUZ8 300 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 PRAF2O60831 178 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 MPDU1O75352 247 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 IGLC2P0DOY2 106 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 HTN3P15516 51 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 FGF7P21781 194 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 TSPOP30536 169 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 RPL29P47914 159 aaKnown RBP4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 OPCMLQ14982 345 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 GUK1Q16774 197 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 ATP6V1FQ16864 119 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 MORN5Q5VZ52 161 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 MIC13Q5XKP0 118 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 POM121L12Q8N7R1 296 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 OR10J6PQ8NGY7 276 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 SLC39A9Q9NUM3 307 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 PTTG2Q9NZH5 202 aa4.82□□□□□ -1.64
CCDC88A-213ENST00000476903 NACAE9PAV3 2078 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 TRAV5A0A0B4J249 113 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 SLC17A3O00476 420 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 ZNF253O75346 499 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 RLN2P04090 185 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 SNRPCP09234 159 aaKnown RBP4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 TAS2R60P59551 318 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 NHLRC2Q8NBF2 726 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 SAT2Q96F10 170 aaPredicted RBP4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 C16orf74Q96GX8 76 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 LINC01587Q99440 93 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 C20orf144Q9BQM9 153 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 NMES1Q9C002 83 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 SLC25A31Q9H0C2 315 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 FAM30AQ9NZY2 134 aa4.81□□□□□ -1.64
CCDC88A-213ENST00000476903 PLAC8L1A1L4L8 177 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 E5RGE8 158 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 INMT-MINDY4F8WBC2 141 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 H3BQ15 152 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 H3BTX0 84 aa4.8□□□□□ -1.64
CCDC88A-213ENST00000476903 H7BYZ3 331 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms