RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 LINC00479Q96M42 142 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 AGPAT4-IT1Q9H0P7 198 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 RBAKDNA6NC62 111 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 A8MTW9 85 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 CT45A10P0DMU9 189 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 TMEM78Q5T7P6 136 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 C9orf47Q6ZRZ4 202 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 ARL6IP6Q8N6S5 226 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 HIST1H2BAQ96A08 127 aa11.54□□□□□ -0.56
DDX55-203ENST00000421670 EIF5A2Q9GZV4 153 aaKnown RBP11.54□□□□□ -0.56
DDX55-203ENST00000421670 TENM3Q9P273 2699 aa11.53□□□□□ -0.56
DDX55-203ENST00000421670 TRAV34A0A0B4J273 112 aa11.53□□□□□ -0.56
DDX55-203ENST00000421670 M0R2Z0 102 aa11.53□□□□□ -0.56
DDX55-203ENST00000421670 TAGLN2P37802 199 aaKnown RBP11.53□□□□□ -0.56
DDX55-203ENST00000421670 ZNF506Q5JVG8 444 aa11.53□□□□□ -0.56
DDX55-203ENST00000421670 LINC00322Q6ZN03 302 aaPredicted RBP11.53□□□□□ -0.56
DDX55-203ENST00000421670 TXNDC17Q9BRA2 123 aa11.53□□□□□ -0.56
DDX55-203ENST00000421670 TCEAL7Q9BRU2 100 aa11.53□□□□□ -0.56
DDX55-203ENST00000421670 SERTM2A0A1B0GWG4 89 aa11.52□□□□□ -0.57
DDX55-203ENST00000421670 K7EQM0 130 aa11.52□□□□□ -0.57
DDX55-203ENST00000421670 IGLV2-11P01706 119 aa11.52□□□□□ -0.57
DDX55-203ENST00000421670 SPINK13Q1W4C9 94 aa11.52□□□□□ -0.57
DDX55-203ENST00000421670 PPP1R14DQ9NXH3 145 aa11.52□□□□□ -0.57
DDX55-203ENST00000421670 DNAH9Q9NYC9 4486 aa11.52□□□□□ -0.57
DDX55-203ENST00000421670 F6UZH7 168 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 J3KRW8 73 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 PDE6DO43924 150 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 CA1P00915 261 aaPredicted RBP11.51□□□□□ -0.57
DDX55-203ENST00000421670 AKR1C3P42330 323 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 ZNF138P52744 262 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 TMEM75Q8N9X5 138 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 C2CD4CQ8TF44 421 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 LINC00477Q96M19 166 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 CLUHP3Q96NS8 147 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 DERL1Q9BUN8 251 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 ZNF492Q9P255 531 aa11.51□□□□□ -0.57
DDX55-203ENST00000421670 GIG44P09565 113 aaPredicted RBP11.5□□□□□ -0.57
DDX55-203ENST00000421670 APOC4P55056 127 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 SRSF3P84103 164 aaKnown RBP11.5□□□□□ -0.57
DDX55-203ENST00000421670 KIR3DS1Q14943 382 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 C11orf52Q96A22 123 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 CSTL1Q9H114 145 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 XCL2Q9UBD3 114 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 TRAV12-2A0A075B6T6 113 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 NUTF2P61970 127 aaKnown RBP11.5□□□□□ -0.57
DDX55-203ENST00000421670 UBE2G1P62253 170 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 FLI1Q01543 452 aaPredicted RBP11.5□□□□□ -0.57
DDX55-203ENST00000421670 MORN3Q6PF18 240 aaPredicted RBP11.5□□□□□ -0.57
DDX55-203ENST00000421670 PRNTQ86SH4 94 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 Q86TA4 180 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 PSG8Q9UQ74 426 aa11.5□□□□□ -0.57
DDX55-203ENST00000421670 KIR2DL5BA0A0G2JN68 375 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 KIR2DL5BA0A0G2JPC4 375 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 KIR2DL5AQ8N109 375 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 KIR2DL5BQ8NHK3 375 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 TVP23CQ96ET8 276 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 FMC1Q96HJ9 113 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 FAM19A4Q96LR4 140 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 ODF3Q96PU9 254 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 MED9Q9NWA0 146 aa11.49□□□□□ -0.57
DDX55-203ENST00000421670 RPL35P42766 123 aaKnown RBP11.48□□□□□ -0.57
DDX55-203ENST00000421670 CDKN1BP46527 198 aa11.48□□□□□ -0.57
DDX55-203ENST00000421670 CEBPGP53567 150 aa11.48□□□□□ -0.57
DDX55-203ENST00000421670 DEFB135Q30KP9 77 aa11.48□□□□□ -0.57
DDX55-203ENST00000421670 PRR9Q5T870 116 aa11.48□□□□□ -0.57
DDX55-203ENST00000421670 SBSPONQ8IVN8 264 aa11.48□□□□□ -0.57
DDX55-203ENST00000421670 KLF12Q9Y4X4 402 aa11.48□□□□□ -0.57
DDX55-203ENST00000421670 HUWE1Q7Z6Z7 4374 aaKnown RBP11.48□□□□□ -0.57
DDX55-203ENST00000421670 C9JQL5 133 aa11.47□□□□□ -0.57
DDX55-203ENST00000421670 CRXO43186 299 aaPredicted RBP11.47□□□□□ -0.57
DDX55-203ENST00000421670 LEPP41159 167 aa11.47□□□□□ -0.57
DDX55-203ENST00000421670 TMEM183BQ1AE95 376 aa11.47□□□□□ -0.57
DDX55-203ENST00000421670 ZFAND2AQ8N6M9 145 aa11.47□□□□□ -0.57
DDX55-203ENST00000421670 C8orf49Q96NF6 230 aa11.47□□□□□ -0.57
DDX55-203ENST00000421670 SRP19P09132 144 aaKnown RBP11.46□□□□□ -0.57
DDX55-203ENST00000421670 CRISP2P16562 243 aa11.46□□□□□ -0.57
DDX55-203ENST00000421670 TSPOP30536 169 aa11.46□□□□□ -0.57
DDX55-203ENST00000421670 BTN1A1Q13410 526 aa11.46□□□□□ -0.57
DDX55-203ENST00000421670 GFI1BQ5VTD9 330 aa11.46□□□□□ -0.57
DDX55-203ENST00000421670 TREM1Q9NP99 234 aa11.46□□□□□ -0.57
DDX55-203ENST00000421670 LENEPQ9Y5L5 61 aa11.46□□□□□ -0.57
DDX55-203ENST00000421670 FBLL1A6NHQ2 334 aaKnown RBP11.45□□□□□ -0.58
DDX55-203ENST00000421670 TMEM250H0YL14 139 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 GPX1P07203 203 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 RBMY1A1P0DJD3 496 aaKnown RBP11.45□□□□□ -0.58
DDX55-203ENST00000421670 RBMY1CP0DJD4 496 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 PEA15Q15121 130 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 RBMY1FQ15415 496 aaKnown RBP11.45□□□□□ -0.58
DDX55-203ENST00000421670 NHLRC2Q8NBF2 726 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 NDFIP1Q9BT67 221 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 C1QTNF4Q9BXJ3 329 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 RETNQ9HD89 108 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 RAB19A4D1S5 217 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 KLLNB2CW77 178 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 INSP01308 110 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 LTAP01374 205 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 RNASE4P34096 147 aaKnown RBP11.45□□□□□ -0.58
DDX55-203ENST00000421670 ZNF674Q2M3X9 581 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 CENPWQ5EE01 88 aa11.45□□□□□ -0.58
DDX55-203ENST00000421670 CSNK1G2-AS1Q8NCQ2 148 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms