RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 C9JQL5 133 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 IGKV2D-40P01614 121 aaPredicted RBP10.62□□□□□ -0.71
SKA1-202ENST00000398452 TNP2Q05952 138 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 TMEM241Q24JQ0 296 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 SAPCD1Q5SSQ6 148 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 BAGE2Q86Y30 109 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 OR8A1Q8NGG7 326 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 C20orf173Q96LM9 149 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 LINC00477Q96M19 166 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 MAP6D1Q9H9H5 199 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 BIN3Q9NQY0 253 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 NAT8Q9UHE5 227 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 PSG8Q9UQ74 426 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 NOTCH1P46531 2555 aa10.62□□□□□ -0.71
SKA1-202ENST00000398452 S100A1P23297 94 aa10.61□□□□□ -0.71
SKA1-202ENST00000398452 CENPWQ5EE01 88 aa10.61□□□□□ -0.71
SKA1-202ENST00000398452 FAM24BQ8N5W8 94 aa10.61□□□□□ -0.71
SKA1-202ENST00000398452 SGK494Q96LW2 274 aa10.61□□□□□ -0.71
SKA1-202ENST00000398452 DERL1Q9BUN8 251 aa10.61□□□□□ -0.71
SKA1-202ENST00000398452 ZFP30Q9Y2G7 519 aa10.61□□□□□ -0.71
SKA1-202ENST00000398452 ZNF256Q9Y2P7 627 aaPredicted RBP10.61□□□□□ -0.71
SKA1-202ENST00000398452 A6NJY4 79 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 C9JCJ5 164 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 PRAC2D3DTV9 90 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 ATP6V1G1O75348 118 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 APOC3P02656 99 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 CT45A10P0DMU9 189 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 MGST1P10620 155 aaKnown RBP10.6□□□□□ -0.71
SKA1-202ENST00000398452 ZNF138P52744 262 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 XP32Q5T750 250 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 OR4B1Q8NGF8 309 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 TVP23CQ96ET8 276 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 SMIM12Q96EX1 92 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 LINC00479Q96M42 142 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 FAM110AQ9BQ89 295 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 KLF12Q9Y4X4 402 aa10.6□□□□□ -0.71
SKA1-202ENST00000398452 TRAV8-1A0A0A6YYK1 113 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 TRBV6-1A0A0K0K1D8 114 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 M0R036 132 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 PRB4P10163 310 aaPredicted RBP10.59□□□□□ -0.71
SKA1-202ENST00000398452 PNRC1Q12796 327 aaPredicted RBP10.59□□□□□ -0.71
SKA1-202ENST00000398452 ERCC8Q13216 396 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 BEAN1Q3B7T3 259 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 ACTL10Q5JWF8 245 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 C9orf47Q6ZRZ4 202 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 Q86TA4 180 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 STHQ8IWL8 128 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 SVBPQ8N300 66 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 VGLL1Q99990 258 aa10.59□□□□□ -0.71
SKA1-202ENST00000398452 SAV1Q9H4B6 383 aaPredicted RBP10.59□□□□□ -0.71
SKA1-202ENST00000398452 A0A0J9YX75 114 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 NPIPB6E9PJ23 425 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 F6UB75 175 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 TSPOP30536 169 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 NUTF2P61970 127 aaKnown RBP10.58□□□□□ -0.72
SKA1-202ENST00000398452 ADIRFQ15847 76 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 AGPAT4-IT1Q9H0P7 198 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 LENEPQ9Y5L5 61 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 LY96Q9Y6Y9 160 aa10.58□□□□□ -0.72
SKA1-202ENST00000398452 TGP01266 2768 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 KNCNA6PVL3 124 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 SNAPINO95295 136 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 LTAP01374 205 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 ZNF705DP0CH99 300 aaPredicted RBP10.57□□□□□ -0.72
SKA1-202ENST00000398452 ZNF705BP0CI00 300 aaPredicted RBP10.57□□□□□ -0.72
SKA1-202ENST00000398452 LEPP41159 167 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 ODF3L2Q3SX64 289 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 APRG1Q8IVJ8 170 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 DAZAP1Q96EP5 407 aaKnown RBP10.57□□□□□ -0.72
SKA1-202ENST00000398452 ZNF492Q9P255 531 aa10.57□□□□□ -0.72
SKA1-202ENST00000398452 CARHSP1Q9Y2V2 147 aaKnown RBP10.57□□□□□ -0.72
SKA1-202ENST00000398452 IGKV3-20P01619 116 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 CD7P09564 240 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 HLA-DRB4P13762 266 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 DEFB1P60022 68 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 SMUG1Q53HV7 270 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 SAMD5Q5TGI4 173 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 TMEM183AQ8IXX5 376 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 NHLRC2Q8NBF2 726 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 Q8TAT8 98 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 IGF2BP2-AS1Q96M15 143 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 PRR25Q96S07 402 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 SDF2L1Q9HCN8 221 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 HLA-DRB4X5D2U9 266 aa10.56□□□□□ -0.72
SKA1-202ENST00000398452 VWFP04275 2813 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 TRBV7-9A0A0J9YWB2 115 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 IGLV2-11P01706 119 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 GPX1P07203 203 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 ADCYAP1P18509 176 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 PRR27Q6MZM9 219 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 OCC1Q8TAD7 63 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 ODF3Q96PU9 254 aa10.55□□□□□ -0.72
SKA1-202ENST00000398452 B4DEV8 164 aa10.54□□□□□ -0.72
SKA1-202ENST00000398452 RPL23P62829 140 aaKnown RBP10.54□□□□□ -0.72
SKA1-202ENST00000398452 C10orf91Q5T1B1 145 aa10.54□□□□□ -0.72
SKA1-202ENST00000398452 GDF5OSQ5U4N7 250 aa10.54□□□□□ -0.72
SKA1-202ENST00000398452 LINC01551Q86U37 167 aa10.54□□□□□ -0.72
SKA1-202ENST00000398452 C15orf54Q8N8G6 183 aa10.54□□□□□ -0.72
SKA1-202ENST00000398452 TUBA4BQ9H853 241 aa10.54□□□□□ -0.72
SKA1-202ENST00000398452 PGPEP1LA6NFU8 196 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms