RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM162BQ5T6X4 162 aa13.94□□□□□ -0.18
CCDC88C-203ENST00000389856 SIGLEC15Q6ZMC9 328 aa13.94□□□□□ -0.18
CCDC88C-203ENST00000389856 RPH3ALQ9UNE2 315 aa13.94□□□□□ -0.18
CCDC88C-203ENST00000389856 A0A1B0GXF2 115 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 HIGD1CA8MV81 97 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 H3BTX0 84 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 NUPR1O60356 82 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 SNRPCP09234 159 aaKnown RBP13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 LINC00310P59036 64 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 C16orf54Q6UWD8 224 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 C10orf99Q6UWK7 81 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 NAGKQ9UJ70 344 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 SPINK4O60575 86 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 NDUFA7O95182 113 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 CA1P00915 261 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 FRMD6-AS1P0C7T7 363 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 KLF5Q13887 457 aaPredicted RBP13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 KCNS1Q96KK3 526 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 SAMD10Q9BYL1 202 aa13.93□□□□□ -0.18
CCDC88C-203ENST00000389856 IGHV7-4-1A0A0J9YVY3 117 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 ZNF207O43670 478 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 SCGB1D1O95968 90 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 IGLV2-11P01706 119 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 SAMD13Q5VXD3 122 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 UNQ9165/PRO28630Q6UXU0 137 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 RBPMS2Q6ZRY4 209 aaKnown RBP13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 GOLT1AQ6ZVE7 132 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 REC114Q7Z4M0 266 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 C4orf3Q8WVX3 66 aa13.92□□□□□ -0.18
CCDC88C-203ENST00000389856 A0A1B0GUS0 222 aa13.91□□□□□ -0.18
CCDC88C-203ENST00000389856 TCF21O43680 179 aa13.91□□□□□ -0.18
CCDC88C-203ENST00000389856 SRIP30626 198 aa13.91□□□□□ -0.18
CCDC88C-203ENST00000389856 HBBP68871 147 aa13.91□□□□□ -0.18
CCDC88C-203ENST00000389856 EXOC3-AS1Q8N2X6 119 aa13.91□□□□□ -0.18
CCDC88C-203ENST00000389856 LGALS9O00182 355 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 GPX1P07203 203 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 FOXA3P55318 350 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 PSG3Q16557 428 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 KHDC1LQ5JSQ8 128 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 DMRTA1Q5VZB9 504 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 GLMPQ8WWB7 406 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 DPF1Q92782 380 aa13.9□□□□□ -0.18
CCDC88C-203ENST00000389856 A0A1B0GW15 77 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 DIRC3C9JPN6 131 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 Q6AWC8 147 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 ZNF664Q8N3J9 261 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 C17orf77Q96MU5 243 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 PSG8Q9UQ74 426 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 SMAD5-AS1Q9Y6J3 95 aa13.9□□□□□ -0.19
CCDC88C-203ENST00000389856 ZNF469Q96JG9 3925 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 IGHV3-66A0A0C4DH42 116 aa13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 A8MWP6 167 aa13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 INAFM1C9JVW0 142 aa13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 M0QZ24 198 aa13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 PRNTQ86SH4 94 aa13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 SMPXQ9UHP9 88 aa13.89□□□□□ -0.19
CCDC88C-203ENST00000389856 IGHV3-49A0A0A0MS15 119 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 LINC01619G3V211 115 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 APOHP02749 345 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 SLAQ13239 276 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 LBHQ53QV2 105 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 Q6ZWC4 215 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 COX8CQ7Z4L0 72 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 LURAP1LQ8IV03 231 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 MRPL53Q96EL3 112 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 RHPN1-AS1Q9BWJ2 59 aa13.88□□□□□ -0.19
CCDC88C-203ENST00000389856 IGHV4OR15-8A0A075B7B6 117 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 IGHV3OR16-13A0A075B7E8 117 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 A0A087WW49 117 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 IGHV3-74A0A0B4J1X5 117 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 HOXD3P31249 432 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 KIAA1644Q3SXP7 199 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 LINC00322Q6ZN03 302 aaPredicted RBP13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 LINC01006Q8NI28 216 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 C18orf32Q8TCD1 76 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 SGK494Q96LW2 274 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 PRO1933Q9H354 126 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 AKAP9Q99996 3911 aa13.87□□□□□ -0.19
CCDC88C-203ENST00000389856 HAX1O00165 279 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 CRLF1O75462 422 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 ZNF324O75467 553 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 TM4SF20Q53R12 229 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 KLHL30-AS1Q8NEE0 82 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 ALKBH7Q9BT30 221 aaPredicted RBP13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 NDUFAF3Q9BU61 184 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 PEMTQ9UBM1 199 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 KIR2DL5BA0A0G2JN68 375 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 KIR2DL5BA0A0G2JPC4 375 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 CHEK1O14757 476 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 SAPCD1Q5SSQ6 148 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 GDF5OSQ5U4N7 250 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 TEX43Q6ZNM6 134 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 C8orf86Q6ZUL3 223 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 KIR2DL5AQ8N109 375 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 OR2D3Q8NGH3 330 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 OR1N2Q8NGR9 330 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 GTSF1Q8WW33 167 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 C16orf92Q96LL3 132 aa13.86□□□□□ -0.19
CCDC88C-203ENST00000389856 TRAV8-1A0A0A6YYK1 113 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms