RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NUP214P35658 2090 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-202ENST00000381753 MYLKQ15746 1914 aa7.27□□□□□ -1.25
LIMCH1-202ENST00000381753 RPP21Q9H633 154 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-202ENST00000381753 C2orf70A6NJV1 201 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV1-16P04430 117 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF345Q14585 488 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 EXOC3-AS1Q8N2X6 119 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 LINC01006Q8NI28 216 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 DMRT1Q9Y5R6 373 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 NCOR2Q9Y618 2525 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 LINC01548A6NM66 108 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 ATP6V0E2Q8NHE4 81 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV1D-13A0A0B4J2D9 117 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 IGHV1-24A0A0C4DH33 117 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV1-13P0DP09 117 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 GSN-AS1Q9NRJ2 163 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 FBLN5Q9UBX5 448 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 DOCK9Q9BZ29 2069 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 GREB1Q4ZG55 1949 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV2-24A0A0C4DH68 120 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 TMEM89A2RUT3 159 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 SMIM13P0DJ93 91 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 COL4A4P53420 1690 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 C1orf194Q5T5A4 169 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 Q6P435 159 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 SEM1Q6ZVN7 128 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 EPDR1Q9UM22 224 aa7.26□□□□□ -1.25
LIMCH1-202ENST00000381753 CRYGDP07320 174 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 OTX1P32242 354 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 C14orf178Q8N769 122 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 C5orf56Q8N8D9 126 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 SRSF1Q07955 248 aaKnown RBP eCLIP7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 LINC00311Q8N616 119 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 A0A1W2PPI3 338 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF506Q5JVG8 444 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF833PQ6ZTB9 187 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF747Q9BV97 191 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 ATRXP46100 2492 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 GTF3C1Q12789 2109 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 GREB1LQ9C091 1923 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV1-9A0A0C4DH69 117 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV1-12A0A0C4DH73 117 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 SMIM6P0DI80 62 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 TRPT1Q86TN4 253 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 IL36BQ9NZH7 164 aa7.25□□□□□ -1.25
LIMCH1-202ENST00000381753 A6NDX4 124 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 C15orf62A8K5M9 175 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 LAMTOR3Q9UHA4 124 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 A0A087WWC5 75 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 M0R2P5 195 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 TRGC2P03986 189 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 GAGE2EQ4V326 116 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 GATD1Q8NB37 220 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 SNHG12Q9BXW3 62 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 GAGE2DQ9UEU5 116 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 CACNA1AO00555 2505 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 PAX2Q02962 417 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 HBDP02042 147 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 PYGO2Q9BRQ0 406 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 VCYO14598 125 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 NDUFA3O95167 84 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 XCL1P47992 114 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 ORMDL2Q53FV1 153 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 HHLA3Q9XRX5 114 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 VWA8A3KMH1 1905 aa7.24□□□□□ -1.25
LIMCH1-202ENST00000381753 TYMSP04818 313 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 LMO4P61968 165 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 ORMDL3Q8N138 153 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 C5orf66Q9H5L9 145 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 DOCK4Q8N1I0 1966 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 YPEL3P61236 119 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 LINC00518Q8N0U6 118 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 KLHDC3Q9BQ90 382 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 UQCR10Q9UDW1 63 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 PSMG3-AS1Q96PY0 264 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF407Q9C0G0 2248 aa7.23□□□□□ -1.25
LIMCH1-202ENST00000381753 IGLV10-54A0A075B6I4 117 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 IGKV1-27A0A075B6S5 117 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 WIPF3A6NGB9 483 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 PLNP26678 52 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 NHLRC3Q5JS37 347 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF503-AS2A6NEH8 195 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 NXPH4O95158 308 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 SDHCQ99643 169 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 CCDC168Q8NDH2 2452 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 YLPM1P49750 1951 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 ETDCA0A1B0GVM5 59 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 MPZP25189 248 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 C17orf58Q2M2W7 97 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF491Q8N8L2 437 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF114Q8NC26 417 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 SLC25A2Q9BXI2 301 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 SIRPDQ9H106 197 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 NDUFA7O95182 113 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 C1orf134Q5TEV5 83 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 ZNF48Q96MX3 618 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 Q0VG73 95 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 KIF26BQ2KJY2 2108 aa7.22□□□□□ -1.25
LIMCH1-202ENST00000381753 C9orf153Q5TBE3 101 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms