RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FAM120AOSQ5T036 256 aa12.7□□□□□ -0.38
COL17A1-202ENST00000369733 TMEM141Q96I45 108 aa12.7□□□□□ -0.38
COL17A1-202ENST00000369733 SPAG8Q99932 426 aaPredicted RBP12.7□□□□□ -0.38
COL17A1-202ENST00000369733 AKAP6Q13023 2319 aa12.7□□□□□ -0.38
COL17A1-202ENST00000369733 TICRRQ7Z2Z1 1910 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 IGLC1P0CG04 106 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 KRTAP27-1Q3LI81 207 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 PRSS22Q9GZN4 317 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 COL4A3Q01955 1670 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 KIAA1671Q9BY89 1806 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 FAM223BA6NKX1 122 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 HLA-DRB4P13762 266 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 DIAPH2-AS1Q14236 149 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 LINC00173Q6ZV60 143 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 FAM223AQ8IWN6 122 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 LINC00311Q8N616 119 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 HLA-DRB4X5D2U9 266 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 MALP21145 153 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 HIST1H4AP62805 103 aaKnown RBP12.69□□□□□ -0.38
COL17A1-202ENST00000369733 PCP2Q8IVA1 136 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 GVINP1Q7Z2Y8 2422 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 K7EM74 188 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 SLC25A20O43772 301 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 C12orf74Q32Q52 190 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 TMEM86BQ8N661 226 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 RHPN1-AS1Q9BWJ2 59 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 EDA2RQ9HAV5 297 aa12.69□□□□□ -0.38
COL17A1-202ENST00000369733 NEGR1Q7Z3B1 354 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 F8VRH5 84 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 EFNA4P52798 201 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 DOCK8Q8NF50 2099 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 A0A1W2PRX2 142 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 C11orf1Q9H5F2 150 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 SCRT2Q9NQ03 307 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 TANC1Q9C0D5 1861 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 TRGV4A0A0C4DH28 118 aa12.68□□□□□ -0.38
COL17A1-202ENST00000369733 E7EQL1 145 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 TEX36Q5VZQ5 186 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 LY6HO94772 140 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 LOXP28300 417 aaPredicted RBP12.67□□□□□ -0.38
COL17A1-202ENST00000369733 TRPT1Q86TN4 253 aaKnown RBP12.67□□□□□ -0.38
COL17A1-202ENST00000369733 IGF2BP2-AS1Q96M15 143 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 CHCHD5Q9BSY4 110 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 C11orf53Q8IXP5 236 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 IGLV1-44P01699 117 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 USMG5Q96IX5 58 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 C17orf77Q96MU5 243 aa12.67□□□□□ -0.38
COL17A1-202ENST00000369733 GAGE2AQ6NT46 116 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 FAM110DQ8TAY7 271 aaPredicted RBP12.66□□□□□ -0.38
COL17A1-202ENST00000369733 PAX4O43316 350 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 ZNF415Q09FC8 603 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 RNF138Q8WVD3 245 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 SMIM2Q9BVW6 85 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 PF4P02776 101 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 SHANK1Q9Y566 2161 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 A0A087WX48 190 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 LEPROTO15243 131 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 SAP30O75446 220 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 SPANXA1Q9NS26 97 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 ZNF407Q9C0G0 2248 aa12.66□□□□□ -0.38
COL17A1-202ENST00000369733 C3orf36Q3SXR2 165 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 ROS1P08922 2347 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 GHRHP01286 108 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 FGF6P10767 208 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 BRD3OSQ6XYD6 125 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 ATP6V0E1O15342 81 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 DKK1O94907 266 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 PRO1854Q9UHT4 67 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 C8orf86Q6ZUL3 223 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 NOTCH4Q99466 2003 aa12.65□□□□□ -0.38
COL17A1-202ENST00000369733 LINC01545Q5VT33 79 aa12.65□□□□□ -0.39
COL17A1-202ENST00000369733 C11orf68Q9H3H3 251 aaKnown RBP12.65□□□□□ -0.39
COL17A1-202ENST00000369733 RPL36AP83881 106 aaKnown RBP12.64□□□□□ -0.39
COL17A1-202ENST00000369733 RPL36ALQ969Q0 106 aaKnown RBP12.64□□□□□ -0.39
COL17A1-202ENST00000369733 H3BUX3 64 aa12.64□□□□□ -0.39
COL17A1-202ENST00000369733 C1orf159Q96HA4 380 aa12.64□□□□□ -0.39
COL17A1-202ENST00000369733 ZNF48Q96MX3 618 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-202ENST00000369733 PRIMA1Q86XR5 153 aa12.64□□□□□ -0.39
COL17A1-202ENST00000369733 Q6ZS92 163 aa12.64□□□□□ -0.39
COL17A1-202ENST00000369733 PHLDA1Q8WV24 401 aaPredicted RBP12.64□□□□□ -0.39
COL17A1-202ENST00000369733 FRMD6-AS1P0C7T7 363 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 ANKRD39Q53RE8 183 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 C9orf153Q5TBE3 101 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 MORN5Q5VZ52 161 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 OVOL2Q9BRP0 275 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 TAX1BP3O14907 124 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 SAA4P35542 130 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 DAZ1Q9NQZ3 744 aaKnown RBP12.63□□□□□ -0.39
COL17A1-202ENST00000369733 IFITM1P13164 125 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 ZNF491Q8N8L2 437 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 DOCK7Q96N67 2140 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 TRAV13-1A0A0B4J241 112 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 TEX48A0A1B0GUV7 120 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 OVOL3O00110 214 aa12.63□□□□□ -0.39
COL17A1-202ENST00000369733 SDHAF1A6NFY7 115 aa12.62□□□□□ -0.39
COL17A1-202ENST00000369733 ANXA2RQ3ZCQ2 193 aa12.62□□□□□ -0.39
COL17A1-202ENST00000369733 TRGV1A0A0A0MS02 117 aa12.62□□□□□ -0.39
COL17A1-202ENST00000369733 IGLV2-14P01704 120 aa12.62□□□□□ -0.39
COL17A1-202ENST00000369733 EGR2P11161 476 aaPredicted RBP12.62□□□□□ -0.39
COL17A1-202ENST00000369733 S100A7L2Q5SY68 101 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms