RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 DEFB125Q8N687 156 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 GATD1Q8NB37 220 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 MRPL53Q96EL3 112 aaKnown RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 SLC25A2Q9BXI2 301 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 G3V318 75 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 CCL1P22362 96 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 QRFPP83859 136 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 DAZ2Q13117 558 aaKnown RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 DAZ4Q86SG3 579 aaKnown RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 ORMDL3Q8N138 153 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 POM121L12Q8N7R1 296 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 SPTSSBQ8NFR3 76 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 DAZ3Q9NR90 486 aaKnown RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 MPDZO75970 2070 aa3.21□□□□□ -1.89
USH2A-202ENST00000366942 IGKV1-8A0A0C4DH67 115 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 H3BVH4 76 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 H7C2G1 150 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 C12orf73Q69YU5 71 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 CCBE1Q6UXH8 406 aaPredicted RBP3.21□□□□□ -1.9
USH2A-202ENST00000366942 U3KQE9 123 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 A6NDX4 124 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 IL15RAQ13261 267 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 PMVKQ15126 192 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 CT83Q5H943 113 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 HS3ST6Q96QI5 342 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 KLK12Q9UKR0 248 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 MIA3Q5JRA6 1907 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 A0A087WWL8 130 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 LTAP01374 205 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 DMKNQ6E0U4 476 aaPredicted RBP3.21□□□□□ -1.9
USH2A-202ENST00000366942 TMEM263Q8WUH6 116 aaKnown RBP3.21□□□□□ -1.9
USH2A-202ENST00000366942 PLXNB2O15031 1838 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 TAF1P21675 1872 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1D-42A0A075B6H8 117 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 IGHV3-73A0A0B4J1V6 119 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 PAGE4O60829 102 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 FABP4P15090 132 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 FREM3P0C091 2139 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 IGHV1-58A0A0C4DH39 117 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 MIAQ16674 131 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 C1orf100Q5SVJ3 147 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 C9orf47Q6ZRZ4 202 aa3.21□□□□□ -1.9
USH2A-202ENST00000366942 RPP21Q9H633 154 aaKnown RBP3.21□□□□□ -1.9
USH2A-202ENST00000366942 QSER1Q2KHR3 1735 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 MAST2Q6P0Q8 1798 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 HERVK_113P63121 156 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 ZNF497Q6ZNH5 498 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 Q6ZQT7 251 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 TMEM136Q6ZRR5 245 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 HIST1H4GQ99525 98 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.2□□□□□ -1.9
USH2A-202ENST00000366942 C19orf84I3L1E1 186 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1-39P01597 117 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1D-39P04432 117 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 SFTA3P0C7M3 94 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 CHCHD7Q9BUK0 85 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 WNK3Q9BYP7 1800 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 LINC00473A8K010 186 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 I3L3M4 83 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 CCSO14618 274 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 SNRPEP62304 92 aaKnown RBP3.2□□□□□ -1.9
USH2A-202ENST00000366942 GAGE2EQ4V326 116 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 NTN5Q8WTR8 489 aaPredicted RBP3.2□□□□□ -1.9
USH2A-202ENST00000366942 GAGE2DQ9UEU5 116 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 U3KQA8 63 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 IGHV4OR15-8A0A075B7B6 117 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 A0A087WW49 117 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 FSTL3O95633 263 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 IGHV3-48P01763 117 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 FGF6P10767 208 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 NMSQ5H8A3 153 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 ZC2HC1BQ5TFG8 222 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 FAM222AQ5U5X8 452 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 C6orf223Q8N319 242 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 SIGMAR1Q99720 223 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 C16orf95Q9H693 158 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 ZNF581Q9P0T4 197 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 UBR3Q6ZT12 1888 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 EPM2AB3EWF7 344 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 IGHG4P01861 327 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 PRB3Q04118 309 aaPredicted RBP3.2□□□□□ -1.9
USH2A-202ENST00000366942 DIRC1Q969H9 104 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 CITED1Q99966 193 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 PARLQ9H300 379 aa3.2□□□□□ -1.9
USH2A-202ENST00000366942 HEATR5BQ9P2D3 2071 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 TRBV10-1A0A0K0K1A3 114 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 LOC107984640A0A0U1RRK4 108 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 PRB2P02812 416 aaPredicted RBP3.19□□□□□ -1.9
USH2A-202ENST00000366942 HERV-K104P63124 156 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 PLPPR1Q8TBJ4 325 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 IGF2RP11717 2491 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 LOC107984156A0A0G2JMH3 177 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 LGALS9O00182 355 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 WISP3O95389 354 aaPredicted RBP3.19□□□□□ -1.9
USH2A-202ENST00000366942 IGHV4-30-4P0DP06 118 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 KIAA0040Q15053 153 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 ARL17AQ8IVW1 177 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 ORAOV1Q8WV07 137 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 GPR146Q96CH1 333 aa3.19□□□□□ -1.9
USH2A-202ENST00000366942 ZNF837Q96EG3 531 aaPredicted RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms